Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2860g00004 ATGTCGTTGAGTCCTCCGAGAGAGAGAAACAACGTGAATGGCAGAAGGCGAGAGAGGCCAACGTTCCAGATGTACTGGTGCTTCCAGTGCAACCGCATGGTCCGCGTCGCAGTGGATAACAATAACCCCTCAGAGGTCACGTGTCCGCGCTGCTTCGGCCAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTCGTTGTCGATTTCACTACCCCAGACCCCTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGATGGACCCACCCATACGCCGTTTCCCGGGTCTCCTCCAACCCGAACCCGAAGAGGTCCCGGTTCATCACCACCGCCGCCGTCGCTTACGCCGCCACCAACCCGAACCCGAATCCGAACCCGTCCCTGAACCCCCACAACCCCGCCCGCGCACGTGGATCGTATTCCAGCCCATGGACTCACCCAACCCCTTCCTGTCCATTAACAACATTCCTAACCGCCCCGGCCCAGGCCCACTTCCATTCCCGCTCCCGCGCGCCGTGGACACTCGCGACTATTTCTTTGGACCTGGACTCAACGAACTCATCGAACAGATAACCGAAAACGACAGACAGGGTCCCGCGCCGGCGCCGGAGAGGGCCATCGAATCGATTCCGACAGTGAAAATTGTGAGCGCGCATCTGAAGGAGAATTCTCAGTGTCCAGTTTGTCAGGAGGAATTCGAAGTTGGCGGGGAAGCGAGGGAACTTGCGTGCAAACACATATATCACTCGGATTGCATTGTTCCGTGGCTGAGGCTTCACAATTCTTGTCCAGTGTGCCGTCAAGAGGTTCCTGTGCCGTCTTCTTCGTCGGAGGAGGATGAGTGTGTTGATGTAAGCGGAGATGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACCCGTCGTTTTACTTCGGTTTGGCCTTTCAACTCAAGGTATCGACGGGTTCACCCTCAAGGAAATAATAATGTTGCTGCTGCTTCTTCCAGGGGATATTTTGCATCTGACAGTCCGACACTCTCTGGCGTTAGGAGGCAACCCTCTTGCTGCATTCTTTAA 1062 0.5603 MSLSPPRERNNVNGRRRERPTFQMYWCFQCNRMVRVAVDNNNPSEVTCPRCFGQFICEVNVPRPRLVVDFTTPDPSPEARLLEALSLMMDPPIRRFPGLLQPEPEEVPVHHHRRRRLRRHQPEPESEPVPEPPQPRPRTWIVFQPMDSPNPFLSINNIPNRPGPGPLPFPLPRAVDTRDYFFGPGLNELIEQITENDRQGPAPAPERAIESIPTVKIVSAHLKENSQCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRQEVPVPSSSSEEDECVDVSGDEGRLRRCLRWTRRFTSVWPFNSRYRRVHPQGNNNVAAASSRGYFASDSPTLSGVRRQPSCCIL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2860g00004 353 MobiDBLite consensus disorder prediction 98 138 - -
Vium2860g00004 353 SUPERFAMILY RING/U-box 208 275 - -
Vium2860g00004 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 275 IPR013083 -
Vium2860g00004 353 SMART ring_2 228 268 IPR001841 -
Vium2860g00004 353 ProSiteProfiles Zinc finger RING-type profile. 228 269 IPR001841 -
Vium2860g00004 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 128 273 - -
Vium2860g00004 353 FunFam E3 ubiquitin-protein ligase RING1-like 191 275 - -
Vium2860g00004 353 Pfam Ring finger domain 227 269 IPR001841 -
Vium2860g00004 353 Pfam zinc-ribbon 23 58 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2860g00004 Vium-Chr2860 36901 39468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2860g00004 200 318 C3H Transcription Factor Family AT1G68180 44.538 9.60e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2860g00004 K11982 - gmx:100787399 400.593