Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2860g00003 ATGTCGTTGAGTCCTCCGAGAGAGAGAAACAACGTGAATGGCAGAAGGCGAGAGAGGCCAACGTTCCAGATGTACTGGTGCTTCCAGTGCAACCGCATGGTCCGCGTCGCAGTGGATAACAATAACCCCTCAGAGGTCACGTGTCCGCGCTGCTTCGGCCAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTCGTTGTCGATTTCACTACCCCAGACCCCTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGATGGACCCACCCATACGCCGTTTCCCGGGTCTCCTCCAACCCGAACCCGAAGAGGTCCCGGTTCATCACCACCGCCGCCGTCGCTTACGCCGCCACCAACCCGAACCCGAATCCGAACCCGTCCCTGAACCCCCACAACCCCGCCCGCGCACGTGGATCGTATTCCAGCCCATGGACTCACCCAACCCCTTCCTGTCCATTAACAACATTCCTAACCGCCCCGGCCCAGGCCCACTTCCATTCCCGCTCCCGCGCGCCGTGGACACTCGCGACTATTTCTTTGGACCTGGACTCAACGAACTCATCGAACAGATAACCGAAAACGACAGACAGGGTCCCGCGCCGGCGCCGGAGAGGGCCATCGAATCGATTCCGACAGTGAAAATTGTGAGCGCGCATCTGAAGGAGAATTCTCAGTGTCCAGTTTGTCAGGAGGAATTCGAAGTTGGCGGGGAAGCGAGGGAACTTGCGTGCAAACACATATATCACTCGGATTGCATTGTTCCGTGGCTGAGGCTTCACAATTCTTGTCCAGTGTGCCGTCAAGAGGTTCCTGTGCCGTCTTCTTCGTCGGAGGAGGATGAGTGTGTTGATGTAAGCGGAGATGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACCCGTCGTTTTACTTCGGTTTGGCCTTTCAACTCAAGGTATCGACGGGTTCACCCTCAAGGAAATAATAATGTTGCTGCTGCTTCTTCCAGGGGATATTTTGCATCTGACAGTCCGACACTCTCTGGCGCAGTTAGGAGGCAACCCTCTTGCTGCATTCTTTAA 1065 0.5606 MSLSPPRERNNVNGRRRERPTFQMYWCFQCNRMVRVAVDNNNPSEVTCPRCFGQFICEVNVPRPRLVVDFTTPDPSPEARLLEALSLMMDPPIRRFPGLLQPEPEEVPVHHHRRRRLRRHQPEPESEPVPEPPQPRPRTWIVFQPMDSPNPFLSINNIPNRPGPGPLPFPLPRAVDTRDYFFGPGLNELIEQITENDRQGPAPAPERAIESIPTVKIVSAHLKENSQCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRQEVPVPSSSSEEDECVDVSGDEGRLRRCLRWTRRFTSVWPFNSRYRRVHPQGNNNVAAASSRGYFASDSPTLSGAVRRQPSCCIL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2860g00003 354 MobiDBLite consensus disorder prediction 98 138 - -
Vium2860g00003 354 SUPERFAMILY RING/U-box 208 275 - -
Vium2860g00003 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 275 IPR013083 -
Vium2860g00003 354 SMART ring_2 228 268 IPR001841 -
Vium2860g00003 354 Pfam Ring finger domain 227 269 IPR001841 -
Vium2860g00003 354 ProSiteProfiles Zinc finger RING-type profile. 228 269 IPR001841 -
Vium2860g00003 354 FunFam E3 ubiquitin-protein ligase RING1-like 191 275 - -
Vium2860g00003 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 128 273 - -
Vium2860g00003 354 Pfam zinc-ribbon 23 58 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2860g00003 Vium-Chr2860 36901 39468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2860g00003 200 318 C3H Transcription Factor Family AT1G68180 44.538 9.96e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2860g00003 K11982 - gmx:100787399 403.675