Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2857g00002 ATGCCAGCAAGAAAATATTACTGCGACTACTGTGACAAGCAATTCCAAGACACACCAGCTGATCGGAAACGACACGTTAATGGTATTCAACACCTCCAAGCCAAAGCTCGCTGGTACGATTCCTTCAATCAACACCACCAACAAATCCCTAATCCTCCCCTTTGCTTTCACTTCCTAAACACGGGTTTTTGCCGTTACGGCCACTCTTGCAAGTACCTTCATCCCACTCCCAACAATACTACACAGCACGCTCCAATTCCCTTACCAGGGAATGTGGTAGGAGTGTCATTGGGAAATTTGCCCCCGTCGTTGCAGCCTCCGCCGGAGGCTGGATATCCCCATCTCCCCTTTGTGGATTGGGGATAG 366 0.4973 MPARKYYCDYCDKQFQDTPADRKRHVNGIQHLQAKARWYDSFNQHHQQIPNPPLCFHFLNTGFCRYGHSCKYLHPTPNNTTQHAPIPLPGNVVGVSLGNLPPSLQPPPEAGYPHLPFVDWG 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2857g00002 121 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Vium2857g00002 121 Pfam U1 zinc finger 5 39 IPR013085 GO:0008270
Vium2857g00002 121 Gene3D - 46 88 - -
Vium2857g00002 121 SUPERFAMILY CCCH zinc finger 49 77 IPR036855 GO:0046872
Vium2857g00002 121 Gene3D Classic Zinc Finger 3 45 - -
Vium2857g00002 121 PANTHER NUCLEASE-RELATED 1 121 - -
Vium2857g00002 121 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Vium2857g00002 121 SUPERFAMILY beta-beta-alpha zinc fingers 4 49 IPR036236 -
Vium2857g00002 121 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium2857g00002 zf-U1 8.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2857g00002 K13152 - gmx:100527203 209.149