Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2852g00006 ATGTTGAGAATGAATAAAGAGTCACTTGATTACTGGAGGAATTACTTTGGAGCTGCGAACTCTGACATATTTGGCATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCGAGGAGTTCAGGATGAGGAGGGATGGGATTGCAGAGAGATTGTTTTCTTGCAGACTGAGTCGATGTTTGGGGTGTGAGCGGGTGGAATTGTCTGTCCCAGTGGATGATGATGGTGGTGGTTGTAAGAATGGCTTTGAAAGGGCCGGTGCTGAGTTTGAGTCTGAAGCAGGCGCAAGTAAAGAGAGCAAGGTCAATAGTGCCAGCGTTGATGATCCTGGAGTGATGAACACTAACCGAGCTAGCAATTACAGCTATGGGGAAGCTGAGGCGTTGACTGATGAGATTGAAGAAGAGTCACAATATGTTGAAGAGGTATTCAGGATCAAGGATGTTTTGCTTAACTGTGAAGAAGAGTCTGATTCAGTTTTGTTTGATTCATTGAGGAGGCTTCAGCTGATGGAACTCACAGTGGATCTTTTGAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTTCGAAAGCATGGATCAAGTGACATTTGTCTACTAGCGCGGACTCTTATCGAAGCCTGGAAGGAAATGGTGGATGATTGGGTCAAGGCTACCACAGCTATTGCAGGTTCAGAAGGTACTCCAGATTCAGTAAATCCATCTGTTATTGATGATGAAGAAGGTCTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCCCCACCAACAGGTTCTATGGAACTCTCCCAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACATAGTGGGGAATTCATCAAAAACCGTGATCATGGAAGAAGTCCATCCCTGAGGAGGAAACCTCAAGCATCAAATGAGGCAAACATTATAGCCAAGGACGGTAAGGGTCAGCAAGCAAAGAAAAATGAGGTTGCTGTGAGGCCAAATAAACCAGTTATCAGTGATTCCGGTCCTGGCAGACCACCAAAATCAACCATGCAGAAGAAAGGCTCTATTGAGCCGAAGGTGCAACAGAATACAGTGAAGAATACTATACCAAAAAATCCTCATGTTCGTCAGCTAGATAAACCCAGGTGTTCGGATGATGCTTCAGTCCAAGTGAAGTTAGAAGCCAGTAAGAGGAAACTTCAGGAGCGGTATCAACAAGTTGAAAATGCTAAGAGGCAGAGGACAGTACAGGTTATGGAGTTGCATGACCTCCCAAAGCAAGGTATTGGCCACCGGAATCCGCATTTGAAACCCGGAAATCACAAGAGGCAATGGGGTAATGGACGAAGATAG 1338 0.4559 MLRMNKESLDYWRNYFGAANSDIFGIIDHAIMVAASDCPEEFRMRRDGIAERLFSCRLSRCLGCERVELSVPVDDDGGGCKNGFERAGAEFESEAGASKESKVNSASVDDPGVMNTNRASNYSYGEAEALTDEIEEESQYVEEVFRIKDVLLNCEEESDSVLFDSLRRLQLMELTVDLLKATEIGKAVNPLRKHGSSDICLLARTLIEAWKEMVDDWVKATTAIAGSEGTPDSVNPSVIDDEEGLPSPPMDEGALFAPPTGSMELSQFFDGMDDDGNPRHSGEFIKNRDHGRSPSLRRKPQASNEANIIAKDGKGQQAKKNEVAVRPNKPVISDSGPGRPPKSTMQKKGSIEPKVQQNTVKNTIPKNPHVRQLDKPRCSDDASVQVKLEASKRKLQERYQQVENAKRQRTVQVMELHDLPKQGIGHRNPHLKPGNHKRQWGNGRR 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2852g00006 445 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
Vium2852g00006 445 MobiDBLite consensus disorder prediction 273 296 - -
Vium2852g00006 445 SMART TFS2_5 141 216 IPR003617 GO:0005634
Vium2852g00006 445 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 132 225 IPR035441 -
Vium2852g00006 445 CDD TFIIS_I 142 215 - -
Vium2852g00006 445 Coils Coil 385 412 - -
Vium2852g00006 445 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 433 IPR044805 -
Vium2852g00006 445 MobiDBLite consensus disorder prediction 226 356 - -
Vium2852g00006 445 MobiDBLite consensus disorder prediction 430 445 - -
Vium2852g00006 445 MobiDBLite consensus disorder prediction 421 445 - -
Vium2852g00006 445 Pfam TFIIS helical bundle-like domain 166 214 IPR017923 -
Vium2852g00006 445 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 139 228 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2852g00006 Vium-Chr2852 34517 39990 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium2852g00006 Med26 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2852g00006 - - gmx:100775579 753.436