Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium284g00011 ATGGAGAATTATAGCATGTTGTTTCCTTGTCCCAATTCTTCCAGCTACCCCATTTCAAAGAGTGGCGTGGGAACCTCTCAGCATGGTTTTGGTGGTCAAAGCTCCAATGCATTCCTAGGTCTAAGGCCTAGTAATGAGAGTAGTGGTAGTGATCATGAAAACAAAGGAGAAGGTGGTAGAGATGCTGCCGTGTTAATGTCTCAGATCACTGGTGGCATTAATGTGAGTGATGAGTTAGGTGGTTTGGGAAATGGTAACAGTAATGGCAAAAAGAAAGGGGAGAAAAAGGTTCGAAAGCCTAGATATGCTTTCCAAACCAGGAGCCAGGTTGATATTCTTGATGATGGGTATCGGTGGAGGAAGTATGGCCAAAAAGCTGTCAAAAACAACAAGTTTCCGAGGAGTTACTACAGGTGCACGCATCAAGGGTGCAATGTGAAGAAGCAAGTCCAACGCCTAACCAAAGACGAAGGGGTAGTGGTGACTACTTATGAAGGAGTCCACACTCATCCAATTGAGAAGACAACAGATAACTTTGAACACATTTTGAGTCAGATGCAAATATACACTCCCTTTTGA 579 0.437 MENYSMLFPCPNSSSYPISKSGVGTSQHGFGGQSSNAFLGLRPSNESSGSDHENKGEGGRDAAVLMSQITGGINVSDELGGLGNGNSNGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium284g00011 192 MobiDBLite consensus disorder prediction 76 99 - -
Vium284g00011 192 Pfam WRKY DNA -binding domain 114 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium284g00011 192 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 34 175 IPR044810 GO:0003700
Vium284g00011 192 ProSiteProfiles WRKY domain profile. 108 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium284g00011 192 Gene3D WRKY domain 98 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium284g00011 192 MobiDBLite consensus disorder prediction 19 47 - -
Vium284g00011 192 SMART WRKY_cls 113 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium284g00011 192 FunFam WRKY transcription factor 57 99 173 - -
Vium284g00011 192 SUPERFAMILY WRKY DNA-binding domain 105 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium284g00011 192 MobiDBLite consensus disorder prediction 19 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium284g00011 Vium-Chr284 208439 210649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium284g00011 101 192 WRKY Transcription Factor Family AT5G13080 88.043 8.42e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium284g00011 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium284g00011 - - pvu:PHAVU_001G088200g 350.903