Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium284g00010 ATGACCACCACTTTAAAGCCACCCATTGGGTTGCGCTTCCTCCAACAACCGTCGTTTTTTCTTGGTTCCAAATCGCTAAAGTTCCCAACCACTCAGCTTCCCAGAATCAACTGTAGCCACTCCTCTTTCGAAGTTCGAGAGGTTAGCTATCAACCCCCGGGGACTCAGCTTAAACTTCTAAATTCAGTTAGCTTTTCACTTCCAGAGAAAAGTTTCGGCCTAATTTTCGGACAGAGTGGAAGTGGAAAAACAACCCTATTGCAGCTTCTTGCAGGAATATGCAAACCAACCTCGGGATCTATTTACATCCAAAAGTATGGGAATGATGGAAATCCTAGTCAAACTCCGGAGCCCTTGGTGCCAGAAAGGGTTGGTATTGTCTTCCAGTTTCCTGAGAGGTATTTTGTCGCAGATAATGTGCTTGATGAAGTCACTTTTGGTTGGCCAAGGCAAAAGGGTAACCATCACCTCAGGGAGAATCTTACTCTAGGGCTACAAAGGGCAATTAACTGGGTTGGATTAAGTGGGATATCATTGGATAAAAATCCTCACTCCCTTAGTGGTGGTTACAAACGCCGTCTTGCCTTGGCAATACAATTAGTGCAAACCCCTGATCTATTGATATTGGATGAACCTCTTGCTGGACTCGATTGGAAAGCACGTGCTGATGTTGTGAAGCTGTTGAAGCATTTAAAAAAGGAGTTAACTGTGCTAGTTGTTAGTCATGATTTGAGAGAATTTGCGAATCTAGTTGATCGATCATGGAGAATGGAAATGGGTGGAAACCTTAAAGAAGAATTTCTACCATTGTAA 813 0.433 MTTTLKPPIGLRFLQQPSFFLGSKSLKFPTTQLPRINCSHSSFEVREVSYQPPGTQLKLLNSVSFSLPEKSFGLIFGQSGSGKTTLLQLLAGICKPTSGSIYIQKYGNDGNPSQTPEPLVPERVGIVFQFPERYFVADNVLDEVTFGWPRQKGNHHLRENLTLGLQRAINWVGLSGISLDKNPHSLSGGYKRRLALAIQLVQTPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLREFANLVDRSWRMEMGGNLKEEFLPL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium284g00010 270 PANTHER HEAVY METAL TRANSPORTER 44 267 - -
Vium284g00010 270 FunFam ABC transporter I family member 11 chloroplastic 32 268 - -
Vium284g00010 270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 260 IPR027417 -
Vium284g00010 270 SMART AAA_5 69 261 IPR003593 GO:0016887
Vium284g00010 270 Pfam ABC transporter 60 213 IPR003439 GO:0005524
Vium284g00010 270 Gene3D - 31 267 IPR027417 -
Vium284g00010 270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 268 IPR003439 GO:0005524
Vium284g00010 270 CDD ABC_cobalt_CbiO_domain1 44 260 IPR015856 GO:0005524|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium284g00010 Vium-Chr284 108784 117911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium284g00010 70 249 Calmodulin-binding Proteins AT2G36910 24.339 1.87e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium284g00010 - - vun:114196181 509.22