Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium284g00009 ATGACCACCACTTTAAAGCCACCCATTGGGTTGCGCTTCCTCCAACAACCGTCGTTTTTTCTTGGTTCCAAATCGCTAAAGTTCCCAACCACTCAGCTTCCCAGAATCAACTGTAGCCACTCCTCTTTCGAAGTTCGAGAGGTTAGCTATCAACCCCCGGGGACTCAGCTTAAACTTCTAAATTCAGTTAGCTTTTCACTTCCAGAGAAAAGTTTCGGCCTAATTTTCGGACAGAGTGGAAGTGGAAAAACAACCCTATTGCAGCTTCTTGCAGGAATATGCAAACCAACCTCGGGATCTATTTACATCCAAAAGTATGGGAATGATGGAAATCCTAGTCAAACTCCGGAGCCCTTGGTGCCAGAAAGGGTTGGTATTGTCTTCCAGTTTCCTGAGAGGTATTTTGTCGCAGATAATGTGCTTGATGAAGTCACTTTTGGTTGGCCAAGGCAAAAGGGTAACCATCACCTCAGGGAGAATCTTACTCTAGGGCTACAAAGGGCAATTAACTGGGTAGTTATGCTTTTGTATACCACCAAGTGTATTTTTATAATACATGTTGGATTAAGTGGGATATCATTGGATAAAAATCCTCACTCCCTTAGTGGTGGTTACAAACGCCGTCTTGCCTTGGCAATACAATTAGTGCAAACCCCTGATCTATTGATATTGGATGAACCTCTTGCTGGACTCGATTGGAAAGCACGTGCTGATGTTGTGAAGCTGTTGAAGCATTTAAAAAAGGAGTTAACTGTGCTAGTTGTTAGTCATGATTTGAGAGAATTTGCGAATCTAGTTGATCGATCATGGAGAATGGAAATGGGTGGAAACCTTAAAGAAGAATTTCTACCATTGTAA 858 0.4242 MTTTLKPPIGLRFLQQPSFFLGSKSLKFPTTQLPRINCSHSSFEVREVSYQPPGTQLKLLNSVSFSLPEKSFGLIFGQSGSGKTTLLQLLAGICKPTSGSIYIQKYGNDGNPSQTPEPLVPERVGIVFQFPERYFVADNVLDEVTFGWPRQKGNHHLRENLTLGLQRAINWVVMLLYTTKCIFIIHVGLSGISLDKNPHSLSGGYKRRLALAIQLVQTPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLREFANLVDRSWRMEMGGNLKEEFLPL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium284g00009 285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 283 IPR003439 GO:0005524
Vium284g00009 285 PANTHER HEAVY METAL TRANSPORTER 44 282 - -
Vium284g00009 285 CDD ABC_cobalt_CbiO_domain1 44 275 IPR015856 GO:0005524|GO:0016020|GO:0055085
Vium284g00009 285 Gene3D - 31 282 IPR027417 -
Vium284g00009 285 Pfam ABC transporter 60 228 IPR003439 GO:0005524
Vium284g00009 285 SMART AAA_5 69 276 IPR003593 GO:0016887
Vium284g00009 285 FunFam ABC transporter I family member 11 chloroplastic 32 283 - -
Vium284g00009 285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 275 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium284g00009 Vium-Chr284 108776 117920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium284g00009 44 259 Calmodulin-binding Proteins AT2G36910 25.688 4.46e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium284g00009 - - vun:114196181 499.204