Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2848g00003 ATGGCAGCAGCATGCGTTGGTGGTGCACTTCTTTCTGCTTTCCTGCAGGTTGCATTTGACAGGCTAGCTTCTCCTAAGGTTCTACACTTCTTTCGTCGAAGGAAGCTCGATGAAGCACTGCTCAGTAAATTGAACATCAAAATGTTGTCCATCAATTCTCTTGCTGATGATGCAGAACAAATGCAGTTCCGAGATACACGGGTCAAGGCATGGCTTTTTGCTGTCAAAGATGCTGTGCTTGACGCAGAGGACCTCTTGGATGAAATAGACTATGAACTCACCAAATGTGAAGTGGAAGCTCAGTCTGAATCTCAAAGCCTTAGTAACAAGGTATCAAGTTTCTTCCATTCTACTTTCAGTTCATTTAACAGGAAAATTGACTCAGGCTTGAAACAAGTCCTCGAGAAGCTAGAATATCTCGCGAGCCAAAAGGATTATCTTGGTTTGAAAGAGGCTACTTATTCTGGTCTTCGACCAGGCAGTGTAGTGCAACAAAAATTGGCATCAACTTCCTTGGTGGCTGAAAATGTTATTTATGGAAGAGATTATGACAAAGAAACTATCTTTAATTGGATCACATATGAAACTGACAATCGTAACCAGTTATCAATACTTTCTATTGTGGGCATGGGTGGAGTGGGTAAGACCACACTTGCCCAACATGTGTACAATGACCCAAGGATGGAGGAGGCTGATTTTAGCATCAAAGCTTGGGTTTGCGTTTCAGATGATTTTGATGTTATGGTGGTGACAAGTACAATTCTTGAGGCAATCACTAAATCCAAAGATGATAGTAGAAACCTAGAAATGGCTCATGGAAGACTGAAAGAAAAACTGTCGGGGAAAAAGTTCTTTCTCGTTTTGGATGATGTGTGGAATGAAAGACGAGAGAAATGGGAAGCTGTGCAAACTCCTCTTAATTTTGGAGCATCCGGAAGTAAAATTCTTGTAACAACACGTAGTGAGAAAGTTGCTTCTACAATGCGGTCAAGTAAAGTGCATCGCCTAATGCACTTACAAGAAGATCATTGCTGGGATGTTTTTGCAAAACATGCACTCCAAGATGATCATCCTCAATTGAATGCCGAGCTGAAGGATATTGGCATAAAGATAGTTAAAAAGTGTAAAGGATTACCTCTAGCCCTGAAAGCAATTGGAAGTCTTCTGCACACAAAGTCATTGTTTTCGGAATGGCAATGTGTATTGGTAAGCAAGATATGGGACACGCCAATAGAAGAGAATGAAATTATGCCTGCTCTTTTACTGAGCTATCATCACCTTCCTTCGCATCTCAAGAGATGTTTTGCTTATTTTGCTTTGTTTCCCAAAGATTACAAGTTTGACAAGCAGAGTATAATTCTGTTATGGATAGCTGAAAATTTTCTAGAATGCCCCCAACATAATAAGAGTCCAGAAGAAATTGGTGAATTGTACTTTGATGATCTTTTATCAAGGTCTTTCTTTCAACAGTCAAGTGGATTGGAATCATGTTTTGTCATGCATGACCTTCTCAAC 1515 0.402 MAAACVGGALLSAFLQVAFDRLASPKVLHFFRRRKLDEALLSKLNIKMLSINSLADDAEQMQFRDTRVKAWLFAVKDAVLDAEDLLDEIDYELTKCEVEAQSESQSLSNKVSSFFHSTFSSFNRKIDSGLKQVLEKLEYLASQKDYLGLKEATYSGLRPGSVVQQKLASTSLVAENVIYGRDYDKETIFNWITYETDNRNQLSILSIVGMGGVGKTTLAQHVYNDPRMEEADFSIKAWVCVSDDFDVMVVTSTILEAITKSKDDSRNLEMAHGRLKEKLSGKKFFLVLDDVWNERREKWEAVQTPLNFGASGSKILVTTRSEKVASTMRSSKVHRLMHLQEDHCWDVFAKHALQDDHPQLNAELKDIGIKIVKKCKGLPLALKAIGSLLHTKSLFSEWQCVLVSKIWDTPIEENEIMPALLLSYHHLPSHLKRCFAYFALFPKDYKFDKQSIILLWIAENFLECPQHNKSPEEIGELYFDDLLSRSFFQQSSGLESCFVMHDLLN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2848g00003 505 Gene3D - 338 422 IPR042197 -
Vium2848g00003 505 Gene3D - 423 505 IPR036388 -
Vium2848g00003 505 FunFam Probable disease resistance protein At1g61300 162 333 - -
Vium2848g00003 505 Pfam Rx N-terminal domain 11 104 IPR041118 -
Vium2848g00003 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 437 IPR027417 -
Vium2848g00003 505 Gene3D - 160 334 IPR027417 -
Vium2848g00003 505 PANTHER DISEASE RESISTANCE PROTEIN RP 41 505 IPR044974 GO:0006952
Vium2848g00003 505 Pfam NB-ARC domain 183 424 IPR002182 GO:0043531
Vium2848g00003 505 Gene3D - 33 128 - -
Vium2848g00003 505 PRINTS Disease resistance protein signature 278 292 - -
Vium2848g00003 505 PRINTS Disease resistance protein signature 375 389 - -
Vium2848g00003 505 PRINTS Disease resistance protein signature 204 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2848g00003 Vium-Chr2848 37275 39189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2848g00003 198 441 WRKY Transcription Factor Family AT5G45050 25.882 1.02e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2848g00003 - - vum:124832088 982.63