Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2848g00002 ATGGCAGCAGCATGCGTTGGTGGTGCACTTCTTTCTGCTTTCCTGCAGGTTGCATTTGACAGGCTAGCTTCTCCTAAGGTTCTACACTTCTTTCGTCGAAGGAAGCTCGATGAAGCACTGCTCAGTAAATTGAACATCAAAATGTTGTCCATCAATTCTCTTGCTGATGATGCAGAACAAATGCAGTTCCGAGATACACGGGTCAAGGCATGGCTTTTTGCTGTCAAAGATGCTGTGCTTGACGCAGAGGACCTCTTGGATGAAATAGACTATGAACTCACCAAATGTGAAGTGGAAGCTCAGTCTGAATCTCAAAGCCTTAGTAACAAGGTATCAAGTTTCTTCCATTCTACTTTCAGTTCATTTAACAGGAAAATTGACTCAGGCTTGAAACAAGTCCTCGAGAAGCTAGAATATCTCGCGAGCCAAAAGGATTATCTTGGTTTGAAAGAGGCTACTTATTCTGGTCTTCGACCAGGCAGTGTAGTGCAACAAAAATTGGCATCAACTTCCTTGGTGGCTGAAAATGTTATTTATGGAAGAGATTATGACAAAGAAACTATCTTTAATTGGATCACATATGAAACTGACAATCGTAACCAGTTATCAATACTTTCTATTGTGGGCATGGGTGGAGTGGGTAAGACCACACTTGCCCAACATGTGTACAATGACCCAAGGATGGAGGAGGCTGATTTTAGCATCAAAGCTTGGGTTTGCGTTTCAGATGATTTTGATGTTATGGTGGTGACAAGTACAATTCTTGAGGCAATCACTAAATCCAAAGATGATAGTAGAAACCTAGAAATGGCTCATGGAAGACTGAAAGAAAAACTGTCGGGGAAAAAGTTCTTTCTCGTTTTGGATGATGTGTGGAATGAAAGACGAGAGAAATGGGAAGCTGTGCAAACTCCTCTTAATTTTGGAGCATCCGGAAGTAAAATTCTTGTAACAACACGTAGTGAGAAAGTTGCTTCTACAATGCGGTCAAGTAAAGTGCATCGCCTAATGCACTTACAAGAAGATCATTGCTGGGATGTTTTTGCAAAACATGCACTCCAAGATGATCATCCTCAATTGAATGCCGAGCTGAAGGATATTGGCATAAAGATAGTTAAAAAGTGTAAAGGATTACCTCTAGCCCTGAAAGCAATTGGAAGTCTTCTGCACACAAAGTCATTGTTTTCGGAATGGCAATGTGTATTGGTAAGCAAGATATGGGACACGCCAATAGAAGAGAATGAAATTATGCCTGCTCTTTTACTGAGCTATCATCACCTTCCTTCGCATCTCAAGAGATGTTTTGCTTATTTTGCTTTGTTTCCCAAAGATTACAAGTTTGACAAGCAGAGTATAATTCTGTTATGGATAGCTGAAAATTTTCTAGAATGCCCCCAACATAATAAGAGTCCAGAAGAAATTGGTGAATTGTACTTTGATGATCTTTTATCAAGGTCTTTCTTTCAACAGTCAAGTGGATTGGAATCATGTTTTGTCATGCATGACCTTCTCAACGATTTGGCAAAATATGTTTGTGGAGATATATGCTTCAACTTAGAAGTTGATAAAGCACTGTGTATACCAAAAATGGCTCGTCATTTTTCATTTGCAATCAAAGACATCAAGTATTTTGACAGTTTACATGATGCGAAAAGGTTACGAACATTTATTCCACTTCCTGCTTATGTGAGAGTGTCCTCTTTAAACGATCCATGGCAATGCAAGATTCCAGTTCATGAGTTGTTCTCCAAGTTTAAGTTCATACACACCTTATCTTTGCTATGTTGTTCTGGCCTCCTAGAGGTGCCTGACTCAATAGGTGATCTTAAACATCTACGTTCTTTAGACCTTTCCAGGACTGACATAAGAAAACTACCCGATTCAAGTTGTTTGCTCTACAACTTGCAAATACTAAAGTTGAACTTTTGTCTCCTTTTGAAGGAGTTGCCTTCGAATTTGTACAAACTCAACAATTTACGTTGCCTTGAATTTATAGCTACTTCAGTGAGAAAGGTGCCAATGCATATGGGGAAGATGAAGAATCTCCAAGTACTGAGTTCGTTCTATGTTGGCAAAAGTAATGAATTCGGTATTCAACAGCTCGTAGGACTCAATCTTCATGGAGGGCTATCTATTGGTGATATGCAGAATATTGTGAATCCCTTGGATGCTTTACAAGTAGATTTGAAAAATAAAAAGCACCTTGTAAAGCTAGAGTTGGAATGGAATTCACACCATATCCCAGACAATCCAAGGAATGAAAAACAAGTACTCGAGTATCTACAACCTCCCAAACACTTAAAGAATTTCTCAATCAATCACTATGGTGGTACACAGTTTCCAAGTTGGTTATTTGATAATACCTTATCAAACTTGGTGTCATTAAGCTTGATAGGCTGTAAGTTTTGCCTGCATTTGCCTCCCCTCGGGCTTTTGCCATTTCTCAAGCAGCTGGTGATTATAGAGCTTGATGGGATAGTGGGTGTTGGTGCTGAGTTCCATGGGAGTAGCTCGTCTTCATTTACATGCTTGGAAACATTGTACTTCTTTAATATGAAGGAGTGGGAAGAATGGGATTGTGAAACTGATTTCCCACGTCTTCAACATCTTTCTATAATACATTGCCCCAAGCTCAAAGGGCTGCCAAAGCAACTTCTTCACGTAAAGCAAATAATTATCTGTGAATGTGAAACGTTGACCATTAGCGGACACAACATGGAATCATCAACCCTGGAAAGGATTGGGGATACCATAACTAATAATTCTCTTGAAGTGTTGCACATTTATTCTTGTCTGTCCATGAATATTCCATTGAGACTTTGCTACAATTTACTTGTAACACTGGAGATAGATGGAGCCTTTGACACTCCAATTACCTTTCCTCTAGATTTCTTCCCAAAACTCTTTTCACTCAAACTCGGGTGTTGTAATCTGCAAATGATTTCACAAGATCACACTCATAATCATCTCAAGGATTTGTGTATCAGCAACTCACCACAATTTGAATCATTTCCCATGGAAGGATTATCTGCCCCCAGGCTGGTAAAATTTAGTATTAAAGAATTGATGAACTTGAAATTATTGCCCAAACGCATGGATATCCTCCTTCCATCTCTTACAGACTTACAAATATTAGATTGTCCACAAGTGGAGTTGTTCTCTGATGGAGGTTTTCCATCAAATCTAAATACCATGGATCTCTCAGACTGCTCCAAATTTATGGCCTCAATGAAAATGGCTTTAGGAGCCAACAATTCTCTAGAAGTGTTGTCTGTTCGAAAATTGAATGTGGAGTCTTTTCCTGATGAAGGTTTCTTGCCTTTCTCTCTTACTTGTTTAGAAATCAGGAACTGTTCAGATCTAAAAAACCTTGACTACAAGGGTCTCTGTCACCTCTCCTCTCTTCAGAAATTGTTGTTGTTTAACTGCTCCAACCTCCAATGTTTACCAGAGGAGGGTTTGCCCAATTCCATTTTAGAACTTAAAATTGTTGGTTGTCCATTGCTTGAGCAGTGTCAAGACTATAAGACTGGGAATTGA 3540 0.3929 MAAACVGGALLSAFLQVAFDRLASPKVLHFFRRRKLDEALLSKLNIKMLSINSLADDAEQMQFRDTRVKAWLFAVKDAVLDAEDLLDEIDYELTKCEVEAQSESQSLSNKVSSFFHSTFSSFNRKIDSGLKQVLEKLEYLASQKDYLGLKEATYSGLRPGSVVQQKLASTSLVAENVIYGRDYDKETIFNWITYETDNRNQLSILSIVGMGGVGKTTLAQHVYNDPRMEEADFSIKAWVCVSDDFDVMVVTSTILEAITKSKDDSRNLEMAHGRLKEKLSGKKFFLVLDDVWNERREKWEAVQTPLNFGASGSKILVTTRSEKVASTMRSSKVHRLMHLQEDHCWDVFAKHALQDDHPQLNAELKDIGIKIVKKCKGLPLALKAIGSLLHTKSLFSEWQCVLVSKIWDTPIEENEIMPALLLSYHHLPSHLKRCFAYFALFPKDYKFDKQSIILLWIAENFLECPQHNKSPEEIGELYFDDLLSRSFFQQSSGLESCFVMHDLLNDLAKYVCGDICFNLEVDKALCIPKMARHFSFAIKDIKYFDSLHDAKRLRTFIPLPAYVRVSSLNDPWQCKIPVHELFSKFKFIHTLSLLCCSGLLEVPDSIGDLKHLRSLDLSRTDIRKLPDSSCLLYNLQILKLNFCLLLKELPSNLYKLNNLRCLEFIATSVRKVPMHMGKMKNLQVLSSFYVGKSNEFGIQQLVGLNLHGGLSIGDMQNIVNPLDALQVDLKNKKHLVKLELEWNSHHIPDNPRNEKQVLEYLQPPKHLKNFSINHYGGTQFPSWLFDNTLSNLVSLSLIGCKFCLHLPPLGLLPFLKQLVIIELDGIVGVGAEFHGSSSSSFTCLETLYFFNMKEWEEWDCETDFPRLQHLSIIHCPKLKGLPKQLLHVKQIIICECETLTISGHNMESSTLERIGDTITNNSLEVLHIYSCLSMNIPLRLCYNLLVTLEIDGAFDTPITFPLDFFPKLFSLKLGCCNLQMISQDHTHNHLKDLCISNSPQFESFPMEGLSAPRLVKFSIKELMNLKLLPKRMDILLPSLTDLQILDCPQVELFSDGGFPSNLNTMDLSDCSKFMASMKMALGANNSLEVLSVRKLNVESFPDEGFLPFSLTCLEIRNCSDLKNLDYKGLCHLSSLQKLLLFNCSNLQCLPEEGLPNSILELKIVGCPLLEQCQDYKTGN 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2848g00002 1179 PRINTS Disease resistance protein signature 204 219 - -
Vium2848g00002 1179 PRINTS Disease resistance protein signature 375 389 - -
Vium2848g00002 1179 PRINTS Disease resistance protein signature 278 292 - -
Vium2848g00002 1179 PRINTS Disease resistance protein signature 607 623 - -
Vium2848g00002 1179 SUPERFAMILY L domain-like 499 890 - -
Vium2848g00002 1179 Gene3D Ribonuclease Inhibitor 565 696 IPR032675 -
Vium2848g00002 1179 PANTHER DISEASE RESISTANCE PROTEIN RP 41 875 IPR044974 GO:0006952
Vium2848g00002 1179 Pfam Rx N-terminal domain 11 104 IPR041118 -
Vium2848g00002 1179 ProSiteProfiles Leucine-rich repeat profile. 611 632 IPR001611 GO:0005515
Vium2848g00002 1179 Gene3D - 338 422 IPR042197 -
Vium2848g00002 1179 SUPERFAMILY L domain-like 914 1174 - -
Vium2848g00002 1179 Gene3D - 34 128 - -
Vium2848g00002 1179 Pfam NB-ARC domain 183 424 IPR002182 GO:0043531
Vium2848g00002 1179 FunFam Probable disease resistance protein At1g63360 424 510 - -
Vium2848g00002 1179 Gene3D Ribonuclease Inhibitor 698 896 IPR032675 -
Vium2848g00002 1179 Gene3D Ribonuclease Inhibitor 897 1053 IPR032675 -
Vium2848g00002 1179 Gene3D Ribonuclease Inhibitor 1054 1171 IPR032675 -
Vium2848g00002 1179 Gene3D - 160 334 IPR027417 -
Vium2848g00002 1179 Gene3D - 423 510 IPR036388 -
Vium2848g00002 1179 FunFam Probable disease resistance protein At1g61300 162 333 - -
Vium2848g00002 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 437 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2848g00002 Vium-Chr2848 26391 30504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2848g00002 198 441 WRKY Transcription Factor Family AT5G45050 25.882 4.63e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2848g00002 - - gmx:100777280 1485.7