Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2847g00002 ATGATTTTACCTAAGCAATTTTCAGTTTCAACACTCCGCACCTTAACATTTTTTCTTTGCCTTCTCTTAGTAGGTTGCCAAATCCTTGAAACCCCATCACCACTATCGGATTCAATACCACTAATACCTGACATTTTAAACTTCATAGACCAAAGACTTGCTCTGGTCTTCCCCATTATTCAAGCCTTCAAGAACACAATAACCTCAGATCCTTTGGGAATAACAGCAACATGGGTTGGTCCAGATATATGCAACTACACAGGCTTCTACTGTGACAACCCACCAGATAACCTCACTGCCACAACCATTGCTTCAATTGATTTCAATGGTTTCCAACTCACTGCTCCAACACTTGATGGCTTCATCGATCAACTCCCTGACCTGGCTCTTTTCCATGCAAACAGTAACAAATTTTCTGGCACCATATCGCCAAAAATAGCGGGACTCAAGTTTCTATACGAACTTGATTTAAGTAACAACTTGTTCTCCGGGTTATTTCCCACGTCGGTCATCAACATCCCCACCTTATCCTTTTTGGACATTAGGTACAACTTTTTCACCGGCACGGTTCCCCCACAGATTTTCATGCAGACATTAGATGTTCTTTTCCTCAACAACAACAATTTCATGCTCACACTGCCCAACAATCTAGGAGACACACCCGTCGTTTATCTCACGTTGGCCAACAACAAATTCACCGGGCCCATTCCCCGGAGCATTAGAAAAGCCTCGTCCACGTTGATCGAAGTGCTGCTTTTGAACAACCTTTTAACTGGTTGTCTTCCCTACGACATCGGGTTCTTGGGAAACGTGACGTTGTTTGATGTTGGTGCGAACCTCTTAACTGGGTCAATACCTTGGTCCTTTGGGTGCTTGAAGAAAGTGGAGCAGCTGAACCTGGCAAGGAACCTTTTGTATGGACAGGTTCCGGAAGTGGTGTGTGCGTTGGGGAATTTGGCGAATCTTTCATTGTCTTACAATTATTTTACGAAAGTGGGACCTTTGTGCAAGAGGCTGATTCAAAGAGGGGTTCTGGATGTAAGGAAGAACTGTATTATTGGTCTTCCGGATCAGAGATCAGCGAAGGAATGCATGGCGTTTTTTTCGATTCCGAGGTCTTGTCAGAACCCTGCATCGTTTAATATCATACCGTGTCAAATTCATTGGACGAAACCGCAAGAAAGAACTAAGAGGCATTTGCTTTCATATTCTGCTATTTCCAGAAATAGAGTGCTTTTGTAA 1242 0.434 MILPKQFSVSTLRTLTFFLCLLLVGCQILETPSPLSDSIPLIPDILNFIDQRLALVFPIIQAFKNTITSDPLGITATWVGPDICNYTGFYCDNPPDNLTATTIASIDFNGFQLTAPTLDGFIDQLPDLALFHANSNKFSGTISPKIAGLKFLYELDLSNNLFSGLFPTSVINIPTLSFLDIRYNFFTGTVPPQIFMQTLDVLFLNNNNFMLTLPNNLGDTPVVYLTLANNKFTGPIPRSIRKASSTLIEVLLLNNLLTGCLPYDIGFLGNVTLFDVGANLLTGSIPWSFGCLKKVEQLNLARNLLYGQVPEVVCALGNLANLSLSYNYFTKVGPLCKRLIQRGVLDVRKNCIIGLPDQRSAKECMAFFSIPRSCQNPASFNIIPCQIHWTKPQERTKRHLLSYSAISRNRVLL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2847g00002 413 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vium2847g00002 413 Gene3D Ribonuclease Inhibitor 222 411 IPR032675 -
Vium2847g00002 413 Gene3D Ribonuclease Inhibitor 59 220 IPR032675 -
Vium2847g00002 413 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 39 387 - -
Vium2847g00002 413 SUPERFAMILY L domain-like 63 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2847g00002 Vium-Chr2847 13229 14556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2847g00002 48 371 Leucine-rich Repeat extension Gene Families AT3G24480 48.148 5.92e-99 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2847g00002 - - gmx:100813314 683.33