Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2842g00009 ATGATCTCAAACTCCGACCCTGTAGAACCACTCACTGCGGCCGCGGCCACCTCCGCGGTCGCGGTAACCGCTTCGTCTTCCGCTGAAGGTCAGCCTGCACCGCCGGCGACGCCAAACATTGTGATGTCCTCCAAGGATCACGATTCTCTCTTCAGCGGTGGCGGCATCAGCTTTCTCTCTGGAAGTCGAAGTGGAAGGTTCAGCTATGGATATTCCAGTTTCAAGGGTAAAAGGTCATCAATGGAGGATTTCTTTGAGACCACCATATCAGAGGTCGATGGTCAGATGGTTGCGTTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCCGGACTGCAGAATATTTGAAAAATAATCTATTTAAGAATTTGAGTAGCCATCCTGACTTTATCAAAGACACAAAGACTGCTATAGTAGAAGCATTTAAACAGACAGATATCGACTACCTCAATGAGGAAAAGGGCCATCAAAGAGATGCTGGGTCAACTGCATCAACAGCTATGTTGTTGGGGGACCGAATTGTTGTTGCAAATGTTGGTGATTCCAGAGTAGTTGCAAGTAGAGCTGGTTCAGCTATTCCTTTGTCTATTGATCACAAGCCCGATAGATCTGATGAACGTCAAAGGATTGAAAAGGCTGGGGGATTTATAATCTGGGCTGGAACATGGAGGGTTGGTGGTGTTCTTGCTGTGTCCCGTGCATTTGGCGACAAACTTCTTAAGCCTTATGTTGTTGCTGACCCTGAAATTCAGGAGGAAGAAATTGACGGTGTAGATTTTATTATAATTGCTAGTGATGGCCTTTGGAATGTCATATCAAACAAGGAGGCGGTGTCGTTAGTACAAAATATAACAGATGCAGAAGTGGCATCCAGAGAACTCATAAAAGAAGCTTATGCAAGGGGAAGCTCTGATAACATCACTAGTGTTGTTGTTCGATTTGATATATCCTGA 951 0.4511 MISNSDPVEPLTAAAATSAVAVTASSSAEGQPAPPATPNIVMSSKDHDSLFSGGGISFLSGSRSGRFSYGYSSFKGKRSSMEDFFETTISEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKTAIVEAFKQTDIDYLNEEKGHQRDAGSTASTAMLLGDRIVVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEKAGGFIIWAGTWRVGGVLAVSRAFGDKLLKPYVVADPEIQEEEIDGVDFIIIASDGLWNVISNKEAVSLVQNITDAEVASRELIKEAYARGSSDNITSVVVRFDIS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2842g00009 316 CDD PP2Cc 67 313 IPR001932 -
Vium2842g00009 316 ProSitePatterns PPM-type phosphatase domain signature. 99 107 IPR000222 GO:0043169
Vium2842g00009 316 ProSiteProfiles PPM-type phosphatase domain profile. 68 313 IPR001932 -
Vium2842g00009 316 FunFam probable protein phosphatase 2C 59 60 315 - -
Vium2842g00009 316 SMART PP2C_4 57 311 IPR001932 -
Vium2842g00009 316 Pfam Protein phosphatase 2C 69 306 IPR001932 -
Vium2842g00009 316 PANTHER PROTEIN PHOSPHATASE 47 313 IPR015655 GO:0004722|GO:0006470
Vium2842g00009 316 SUPERFAMILY PP2C-like 62 314 IPR036457 -
Vium2842g00009 316 Gene3D - 62 315 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2842g00009 Vium-Chr2842 64281 69287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2842g00009 40 316 PP2C-type Phosphatase Gene Family AT1G43900 74.007 2.83e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2842g00009 K17506 - gmx:100776867 531.176