Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2842g00008 ATGATCTCAAACTCCGACCCTGTAGAACCACTCACTGCGGCCGCGGCCACCTCCGCGGTCGCGGTAACCGCTTCGTCTTCCGCTGAAGGTCAGCCTGCACCGCCGGCGACGCCAAACATTGTGATGTCCTCCAAGGATCACGATTCTCTCTTCAGCGGTGGCGGCATCAGATTATTTTTGTCTAGCTTTCTCTCTGGAAGTCGAAGTGGAAGGTTCAGCTATGGATATTCCAGTTTCAAGGGTAAAAGGTCATCAATGGAGGATTTCTTTGAGACCACCATATCAGAGGTCGATGGTCAGATGGTTGCGTTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCCGGACTGCAGAATATTTGAAAAATAATCTATTTAAGAATTTGAGTAGCCATCCTGACTTTATCAAAGACACAAAGACTGCTATAGTAGAAGCATTTAAACAGACAGATATCGACTACCTCAATGAGGAAAAGGGCCATCAAAGAGATGCTGGGTCAACTGCATCAACAGCTATGTTGTTGGGGGACCGAATTGTTGTTGCAAATGTTGGTGATTCCAGAGTAGTTGCAAGTAGAGCTGGTTCAGCTATTCCTTTGTCTATTGATCACAAGCCCGATAGATCTGATGAACGTCAAAGGATTGAAAAGGCTGGGGGATTTATAATCTGGGCTGGAACATGGAGGGTTGGTGGTGTTCTTGCTGTGTCCCGTGCATTTGGCGACAAACTTCTTAAGCCTTATGTTGTTGCTGACCCTGAAATTCAGGAGGAAGAAATTGACGGTGTAGATTTTATTATAATTGCTAGTGATGGCCTTTGGAATGTCATATCAAACAAGGAGGCGGTGTCGTTAGTACAAAATATAACAGATGCAGAAGTGGCATCCAGAGAACTCATAAAAGAAGCTTATGCAAGGGGAAGCTCTGATAACATCACTAGTGTTGTTGTTCGATTTGATATATCCTGA 966 0.4472 MISNSDPVEPLTAAAATSAVAVTASSSAEGQPAPPATPNIVMSSKDHDSLFSGGGIRLFLSSFLSGSRSGRFSYGYSSFKGKRSSMEDFFETTISEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKTAIVEAFKQTDIDYLNEEKGHQRDAGSTASTAMLLGDRIVVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEKAGGFIIWAGTWRVGGVLAVSRAFGDKLLKPYVVADPEIQEEEIDGVDFIIIASDGLWNVISNKEAVSLVQNITDAEVASRELIKEAYARGSSDNITSVVVRFDIS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2842g00008 321 ProSiteProfiles PPM-type phosphatase domain profile. 73 318 IPR001932 -
Vium2842g00008 321 SMART PP2C_4 62 316 IPR001932 -
Vium2842g00008 321 ProSitePatterns PPM-type phosphatase domain signature. 104 112 IPR000222 GO:0043169
Vium2842g00008 321 PANTHER PROTEIN PHOSPHATASE 48 318 IPR015655 GO:0004722|GO:0006470
Vium2842g00008 321 SUPERFAMILY PP2C-like 64 319 IPR036457 -
Vium2842g00008 321 CDD PP2Cc 72 318 IPR001932 -
Vium2842g00008 321 FunFam probable protein phosphatase 2C 59 65 320 - -
Vium2842g00008 321 Gene3D - 67 320 IPR036457 -
Vium2842g00008 321 Pfam Protein phosphatase 2C 74 311 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2842g00008 Vium-Chr2842 64281 69288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2842g00008 40 321 PP2C-type Phosphatase Gene Family AT1G43900 72.695 7.21e-155 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2842g00008 K17506 - gmx:100776867 525.013