Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium283g00024 ATGGCGATGCAGACTGCTTACCTGAAAGAACACGAAGGAATTGTTCACAATTCTGTTGGACAGTTGTCGTCTGGAACTTCCGCTCCATGGTGGAATGGCTTAGGATCTCAACCAGTTTATGGAGATTATTGTGGCCAAAACAAGCCCTTTTCGTTGGAGTTTTCGAACTACATCGACCCATTTGCTGGTGGTAAGCAAGCAGTACGAGGAGCTGAGCCAGTGATCGATAGAGGACATGCAACCCAGTTTTCCATCTTTCCAGATGAATGTAAAATGTTAGGCGATGCCCAAAATCCTCAGCCAGCCATAGGACTGCAGCCATCACTTGCTGAGCCCACCAACAATTTCGACATAGGGTTTAATCAGCCTATGATGTGTGCACCATATCCCTGTATGGAGCAATTCTGTGGGATCTCAGCTTACGGACCTCAAATTTCGGGACGTATAATGCTTCCGCATAACATGGCATCTGATGATGCACCAACCTTCGTGAATGCTAAGCAGTACCATGGAATCATCAGACGAAGGCAGTCACGTGCCAAGGCTGTTCTTGAGAATAAACTCATCAAACGTCGCAAGCCTTACATGCATGAGTCACGCCATCTACATGCAATGAGGCGACCAAGAGGAAATGGTGGTCGTTTCTTGAACACAAGAAACTCCAATAATGGAAATGGTGGAAATGATTCTGAAGTGAATAACATGGGTGGCCTACAATTTCTGTCCAGCGCCTCTCAGAGTTCTGAAATGCTGCAATCTGATGTTGGAATAAATTCACCAATGGAGACAGATGAATGCAGTCCAAACATGTCTAGTACAGAAGTGAATAGCATGTTTTCGAGGGAAGGTTTCGATGGCTTTTCTGTGAATCCTCTTGGATCTTCGGTTCTTCCTCTAGGATCTCCTGTGTATCCTCTTGGATCTTCTGTCCATTCGTTAACTAACTTGGTAGGTAGTGGAAATGGTGTTAGCATGCCCACTAGATGGGCTTAA 993 0.4542 MAMQTAYLKEHEGIVHNSVGQLSSGTSAPWWNGLGSQPVYGDYCGQNKPFSLEFSNYIDPFAGGKQAVRGAEPVIDRGHATQFSIFPDECKMLGDAQNPQPAIGLQPSLAEPTNNFDIGFNQPMMCAPYPCMEQFCGISAYGPQISGRIMLPHNMASDDAPTFVNAKQYHGIIRRRQSRAKAVLENKLIKRRKPYMHESRHLHAMRRPRGNGGRFLNTRNSNNGNGGNDSEVNNMGGLQFLSSASQSSEMLQSDVGINSPMETDECSPNMSSTEVNSMFSREGFDGFSVNPLGSSVLPLGSPVYPLGSSVHSLTNLVGSGNGVSMPTRWA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium283g00024 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 161 215 IPR001289 GO:0003700|GO:0006355
Vium283g00024 330 Gene3D - 159 219 - -
Vium283g00024 330 PRINTS CCAAT-binding transcription factor subunit B signature 161 183 IPR001289 GO:0003700|GO:0006355
Vium283g00024 330 PRINTS CCAAT-binding transcription factor subunit B signature 192 215 IPR001289 GO:0003700|GO:0006355
Vium283g00024 330 MobiDBLite consensus disorder prediction 214 233 - -
Vium283g00024 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 97 275 IPR001289 GO:0003700|GO:0006355
Vium283g00024 330 SMART cbf3 157 218 IPR001289 GO:0003700|GO:0006355
Vium283g00024 330 ProSiteProfiles NF-YA/HAP2 family profile. 158 218 IPR001289 GO:0003700|GO:0006355
Vium283g00024 330 MobiDBLite consensus disorder prediction 206 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium283g00024 Vium-Chr283 259421 263722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium283g00024 1 298 CCAAT-HAP2 Transcription Factor Family AT3G05690 38.730 1.52e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vium283g00024 CBFB_NFYA 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium283g00024 K08064 - gmx:100808195 445.662