Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium283g00022 ATGAACAACACAAGCGATTCATCTGGGTACCTTGGCTCCAACAACATAAGTGGCTTTGGCATGGGCATCGGAATTTCAATTGGGATTCTTCTGCTTATCACAACCATCACACTCACCTCCTACTTCTGCACCAGGTCACAGGTACCAACTGTTCCAAGGAGAAGAACTTCTACTGGCCCACAATTCCTGGAGCCACAGCACACAATAGTTGATGTTGGGTTGGATGAAGCCACAATCATGAACTACCCCAAGATGCTGTACTCTGAAGCCAAGCTAAGGAAATCTGATTCCACAGCAACAAGCTGTTCCATATGTCTGGGAGATTACAAAAGTTCTGATGTGCTAAGGGTTTTGCCAGATTGTGAACATGTCTTTCACCTCAAGTGCATAGACCCATGGTTGAGGCTGCATCCAACTTGTCCTCTCTGCAGAACATCCCCTATCCCAACACCTCTCTCGACACCTCTTGCAGAAGTTGTCCCATTAGCAACAAGGCGAGATTAG 504 0.4683 MNNTSDSSGYLGSNNISGFGMGIGISIGILLLITTITLTSYFCTRSQVPTVPRRRTSTGPQFLEPQHTIVDVGLDEATIMNYPKMLYSEAKLRKSDSTATSCSICLGDYKSSDVLRVLPDCEHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium283g00022 167 SMART ring_2 102 143 IPR001841 -
Vium283g00022 167 FunFam E3 ubiquitin-protein ligase ATL6 64 149 - -
Vium283g00022 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 158 IPR045899 -
Vium283g00022 167 Pfam Ring finger domain 101 144 IPR001841 -
Vium283g00022 167 SUPERFAMILY RING/U-box 78 149 - -
Vium283g00022 167 CDD RING-H2_EL5-like 101 144 - -
Vium283g00022 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 148 IPR013083 -
Vium283g00022 167 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium283g00022 Vium-Chr283 212315 213165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium283g00022 6 164 C3H Transcription Factor Family AT2G35910 60.494 8.63e-56 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium283g00022 - - gmx:100796149 263.848