Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium283g00021 ATGGCAAAGAAGACCATGAAGAAGACCAAGGGTCGTCAGAAGATTGAGATAAAAAAGATGAGCAACGAGCATAACCTTCGGGTCACCTTCTCCAAGCGTCGAACTGGGATTTTCAAGAAAGCCAGCGAACTTGCTACCCTCTGTGGTGTGGACATTGCTGTCATCATGTTTTCACCCAGTAACCAGGTTTTCTCCTTTGGAAGCCCTAATGTTGATCCTGTTATCCAACGCTACACGGCGCAAGGTCCACCTCCGCTCCTCACGCTGGACCTGAACGAGGCTCACAGCACCGTGGACGAGGGAGAACTCCATGCGCAACTCAACAACTTGTCCGACCAGATGGCGGCGGAGAAGAAGCACGAAGAGGCTCTGAAACGTCTGATGAAGGATGTGGAGGAACACTCGTGGTGGGCCATGCCGATGGATAGCATGAACGATGCTCAGCTGGAGAAGTACAAGAAGATGTTGGAGGATCTGAAGGAATGTGTGAATGAAAAACGTGAGAAGCTCCTCCTTCAGACCACTTTTGCTTACAACTCACCCACTCAGTTTCTCACAGGTGGAAACAACTCCTTTTCCAGTGTTGATAACTCTGAAACTATACATCCGCCATTGTCGTTGTAG 624 0.4952 MAKKTMKKTKGRQKIEIKKMSNEHNLRVTFSKRRTGIFKKASELATLCGVDIAVIMFSPSNQVFSFGSPNVDPVIQRYTAQGPPPLLTLDLNEAHSTVDEGELHAQLNNLSDQMAAEKKHEEALKRLMKDVEEHSWWAMPMDSMNDAQLEKYKKMLEDLKECVNEKREKLLLQTTFAYNSPTQFLTGGNNSFSSVDNSETIHPPLSL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium283g00021 207 PANTHER MADS BOX PROTEIN 12 165 - -
Vium283g00021 207 Coils Coil 107 127 - -
Vium283g00021 207 CDD MADS_MEF2_like 11 78 IPR033896 GO:0000977|GO:0045944
Vium283g00021 207 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Vium283g00021 207 FunFam Agamous-like MADS-box protein AGL62 22 86 - -
Vium283g00021 207 SUPERFAMILY SRF-like 11 87 IPR036879 GO:0003677|GO:0046983
Vium283g00021 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Vium283g00021 207 Coils Coil 149 173 - -
Vium283g00021 207 MobiDBLite consensus disorder prediction 187 207 - -
Vium283g00021 207 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Vium283g00021 207 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Vium283g00021 207 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Vium283g00021 207 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Vium283g00021 207 Gene3D - 22 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium283g00021 Vium-Chr283 200533 201410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium283g00021 6 207 Type I MADS-box Gene Family AT5G60440 40.580 1.05e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium283g00021 SRF-TF 6.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium283g00021 - - ccaj:109815930 242.662