Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium283g00013 ATGGGAAACAACTGTGTTGGATCGAGAACCTCTACTTCTGATGCCGGAACTCGTGGCTCTTCTGTTTCTAGTTCATACTGGTGGTGTCTTGGACAAAAGAAAGATTCTTCTCATACACAGAAAGGTGGCAAAAAGAACACAAAAGCCATAGAAACTGTTCAAGACCAGCCTCCAGAGGTACTGAAAATTGAGAGTGATGAAGTGAAGCCTCCTCGTCAAGCCAAAGAGACTATACCACCTCCGGAACAAACAAGGGCGCAGCCCCAAAAACCAAAGAGGCCACCCAATGTGAGGAAGCCGGCAAGTGCAGGCCTCAAAGCAGATTCTGTTTTACTAAGGAAAACCGGCCACCTTAAGGAGGGTTACAATATGGGACCAAAGCTTGGACAGGGCCAGTTCGGAACTACTTTCCTTTGTGTGGAGAAGGCTACTGGGAAAGAGTATGCTTGCAAGTCCATATTGAAGAGGAAGCTGGTGACAGAGGAGGATGTGGAGGATGTGAGGAGGGAAATTCAGATAATGCACCACTTGGCAGGCAGTCCTGATGTGATCTCAATCAAGGAGGCTTTTGAGGATGCTGTTTCAGTTCATGTTGTTATGGAGCTGTGTGCTGGCGGTGAGCTCTTTGATAGGATTGTCGAAAGAGGGCATTACACTGAGAGAAAGGCAGCCAAGCTTGCAAGAACAATAGTTGGTGTCATTGAGTCTTGCCACTCTCTTGGAGTCATGCATAGGGATCTTAAGCCTGAGAATTTTCTCTTTGTTAATCAAGAAGAAGAATCCCCTCTCAAGGCTATAGACTTTGGACTTTCTGCTTTTTTCAAACCAGGAGAAATTTTCAATGACGTTGTAGGAAGTCCCTATTATGTAGCACCTGAAGTTCTACGCAAGCGTTATGGCCCCGAAGCAGATGTATGGAGTGCTGGTGTCATTATATACATTCTCTTATGTGGGGTGCCTCCATTTTGGGGAGAAACGGAGCAAGAGATATTCGACGCAATTTTGCATAATCAACCCGATTTCTCATCGGATCCATGGCCTTCCATATCTTCAAGTGCAAAAGACTTGGTTAGAAAGATGCTTGTCAGAGACCCTAGTAAACGGATATCAGCTTTTGACGTTCTTCGTCACCCCTGGATTCAAGTTGATGGAGAAGCTCCTGACAAGCCGCTTGATTCTGCAGTTTTAAGTCGCCTAAAGCAGTTTTATGCAATGAACAAACTCAAGAAAATGGCTCTCAGAGTCATAGCACAGAATCTCTCTGAAGAAGAAATTGCAGGGTTGAAAGAAATGTTTAAGGCGATAGACACAGACAATAGTGGTCAAATTACTTTTGAAGAACTCAAGGTTGGACTGAAAAAGTTTGGTGCTAATCTCAATGAATCTGAAATATACGACCTTATGCAAGCAGCAGATGTTGACAACAGTGGCACAATTGACTACGGAGAATTCATAGCTGCAACATTGCATCTCAACAAGGTTGACAGAGAAGATCATTTAGTTGCAGCTTTTGCTTACTTTGATAAAGATGGAAGTGGCTACATCACCCAAGATGAGCTTCAACAAGCTTGCGAAGAATTTGGCATTGGAGATGTTCGCTTGGAGGAAATGATCCGAGAAGCTGATCAAGATAATGATGGACGAATAGACTACAATGAATTTGTGGCTATGATGCAGAAAGGCAATGCAGATATGGGTAAGAGGGGTCGAAAGGGTAGCACTAGTTTTAGAATATTTAGGGAGGCACTACCGGTGTGTTAA 1761 0.4395 MGNNCVGSRTSTSDAGTRGSSVSSSYWWCLGQKKDSSHTQKGGKKNTKAIETVQDQPPEVLKIESDEVKPPRQAKETIPPPEQTRAQPQKPKRPPNVRKPASAGLKADSVLLRKTGHLKEGYNMGPKLGQGQFGTTFLCVEKATGKEYACKSILKRKLVTEEDVEDVRREIQIMHHLAGSPDVISIKEAFEDAVSVHVVMELCAGGELFDRIVERGHYTERKAAKLARTIVGVIESCHSLGVMHRDLKPENFLFVNQEEESPLKAIDFGLSAFFKPGEIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVIIYILLCGVPPFWGETEQEIFDAILHNQPDFSSDPWPSISSSAKDLVRKMLVRDPSKRISAFDVLRHPWIQVDGEAPDKPLDSAVLSRLKQFYAMNKLKKMALRVIAQNLSEEEIAGLKEMFKAIDTDNSGQITFEELKVGLKKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVDREDHLVAAFAYFDKDGSGYITQDELQQACEEFGIGDVRLEEMIREADQDNDGRIDYNEFVAMMQKGNADMGKRGRKGSTSFRIFREALPVC 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium283g00013 586 CDD EFh 499 559 IPR002048 GO:0005509
Vium283g00013 586 ProSitePatterns EF-hand calcium-binding domain. 542 554 IPR018247 -
Vium283g00013 586 FunFam Calcium-dependent protein kinase SK5 208 392 - -
Vium283g00013 586 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Vium283g00013 586 ProSitePatterns Protein kinases ATP-binding region signature. 128 155 IPR017441 GO:0005524
Vium283g00013 586 SMART serkin_6 122 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium283g00013 586 SUPERFAMILY Protein kinase-like (PK-like) 120 381 IPR011009 -
Vium283g00013 586 FunFam Calcium-dependent protein kinase 1 124 207 - -
Vium283g00013 586 MobiDBLite consensus disorder prediction 1 106 - -
Vium283g00013 586 PANTHER SERINE/THREONINE-PROTEIN KINASE 114 554 - -
Vium283g00013 586 Gene3D - 405 564 - -
Vium283g00013 586 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Vium283g00013 586 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Vium283g00013 586 MobiDBLite consensus disorder prediction 1 36 - -
Vium283g00013 586 ProSiteProfiles EF-hand calcium-binding domain profile. 495 530 IPR002048 GO:0005509
Vium283g00013 586 SUPERFAMILY EF-hand 419 560 IPR011992 -
Vium283g00013 586 SMART efh_1 533 561 IPR002048 GO:0005509
Vium283g00013 586 SMART efh_1 427 455 IPR002048 GO:0005509
Vium283g00013 586 SMART efh_1 499 527 IPR002048 GO:0005509
Vium283g00013 586 SMART efh_1 463 491 IPR002048 GO:0005509
Vium283g00013 586 CDD STKc_CAMK 122 379 - -
Vium283g00013 586 Pfam Protein kinase domain 123 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium283g00013 586 CDD EFh 428 487 IPR002048 GO:0005509
Vium283g00013 586 ProSiteProfiles EF-hand calcium-binding domain profile. 533 564 IPR002048 GO:0005509
Vium283g00013 586 ProSiteProfiles Protein kinase domain profile. 122 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium283g00013 586 Pfam EF-hand domain pair 500 559 IPR002048 GO:0005509
Vium283g00013 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Vium283g00013 586 Gene3D Transferase(Phosphotransferase) domain 1 208 404 - -
Vium283g00013 586 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Vium283g00013 586 FunFam Calcium-dependent protein kinase 1 388 562 - -
Vium283g00013 586 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Vium283g00013 586 Gene3D Phosphorylase Kinase; domain 1 124 207 - -
Vium283g00013 586 Pfam EF-hand domain pair 441 490 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium283g00013 Vium-Chr283 99114 103478 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium283g00013 1 578 EF-hand Containing Proteins AT3G10660 62.923 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium283g00013 Pkinase 1.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium283g00013 K13412 - gmx:100783079 1031.55