Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium283g00006 ATGGAGGTTCCGGAAATGGGAGGCAAGACTGAAACCCATTTGACATCAGCAGCAGCCTTTGTGGAAGGGGGGATTCAAGAAGCATGTGATGATTCTTGTAGCATATGCCTTGAGAATTTTAGCAAAAGTGATCCTGCAACTGTCACTAATTGCAAGCATGACTTCCATCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGTTCTCAATGCCCTATGTGTTGGCAAGCTATCAGCTTGAAGGATGCTACCAGTCAAGAACTGCTCGAGGCAGTAGAGCAGGAGAGGAGCTTGAGGGATATCCCATCCAGAAATGCTTCAATTTTTCATCTTTCGCAGCTTGAATTTCAGCAGTTACCAATGCGTGAGTCTGATATTGAAGAGCGAATCCTTCGACATTTAGCTGCTGCAGCATCAATGAGGAGAGCACACCATCTTGGTCGGAGGGAAAGTCAACGAACTAGGTCATCTGGTCATGGCAATGCACACTCCTTAGTGTACTCAACTCATCCTAGAGCACCTCCATCAGCTACTGGAGCGGGAAATGAACCAGCTGCAATTCCTGCAGGAAATCCATCTTCTCCTCTTATATTTGATGGAACACAACAATCATCACCACAGCAGATGCCCCTATTACAAACTCGGAGTTCTTCTTTTACTTCTGGCTCTACAGTCGCAACAACAAATCTTCAAGGAGTTCACTCTAATGATGGCTTTGCCTCTCATTCCTTGCCTGCAAGCCATGATGAACCAGAGCCATCAGAACAATCATTCTCAGATTCTCTCCTTTCCAAATTTAATGCAGTATCCATGAGATACAAAGAATCAATTTCAAAGGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCCTAATTCTTCTGTGTCAGAACTTGGTTCTGAAGTTAGGAGAGAATTGAATGCCAAAATTGCTAGTGTGTCCCGATTGATTGAGCGCCTCGAAACAGCAAGAGAAAATAAGAGCGCTGCAGGCACTTCTGTATCAAATCATTCCATCGCAGAGACCAGCAACAACCAAAACAATGCGGAAGTTCACGGAGAGAACTCTTTTCCTGGCAGTAATACTTCTGCTACTTTTTCTGTTTCCCCAGATTCAAAGCAAAGCACTTGCTCAGATATGACATGGTGA 1146 0.4476 MEVPEMGGKTETHLTSAAAFVEGGIQEACDDSCSICLENFSKSDPATVTNCKHDFHLQCILEWCQRSSQCPMCWQAISLKDATSQELLEAVEQERSLRDIPSRNASIFHLSQLEFQQLPMRESDIEERILRHLAAAASMRRAHHLGRRESQRTRSSGHGNAHSLVYSTHPRAPPSATGAGNEPAAIPAGNPSSPLIFDGTQQSSPQQMPLLQTRSSSFTSGSTVATTNLQGVHSNDGFASHSLPASHDEPEPSEQSFSDSLLSKFNAVSMRYKESISKGTRGWKERLFSPNSSVSELGSEVRRELNAKIASVSRLIERLETARENKSAAGTSVSNHSIAETSNNQNNAEVHGENSFPGSNTSATFSVSPDSKQSTCSDMTW 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium283g00006 381 Coils Coil 302 322 - -
Vium283g00006 381 MobiDBLite consensus disorder prediction 194 208 - -
Vium283g00006 381 MobiDBLite consensus disorder prediction 323 381 - -
Vium283g00006 381 Pfam Ring finger domain 31 73 IPR001841 -
Vium283g00006 381 SMART ring_2 33 73 IPR001841 -
Vium283g00006 381 MobiDBLite consensus disorder prediction 325 381 - -
Vium283g00006 381 MobiDBLite consensus disorder prediction 228 259 - -
Vium283g00006 381 MobiDBLite consensus disorder prediction 140 208 - -
Vium283g00006 381 FunFam E3 ubiquitin-protein ligase RHF2A 5 107 - -
Vium283g00006 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 83 IPR013083 -
Vium283g00006 381 SUPERFAMILY RING/U-box 26 80 - -
Vium283g00006 381 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Vium283g00006 381 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 22 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium283g00006 Vium-Chr283 59445 64352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium283g00006 30 81 C3H Transcription Factor Family AT4G00335 42.308 3.94e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium283g00006 K19043 - gmx:100803582 563.533