Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2836g00009 ATGCAGGCATCAGAGCAACATAGAAGTTCAAGCATGTACTATCAACCATTACAACAAATTGAAGCCTACTGCTTGCCGCAGTATGGGAACCTTAATCAACAGCTATATTACCATGGTGGAAGCCATGGAACTCACTTTTCAACTCCAAGTTCTTCTGAACTTTACTGTACATTGGAATCATCCTCTGTAGCTGGCAGTTTCACCCTTTACAACTCTCCTTCAACTGTTAGTTTCTCACCTAATGGTAGCCCCATATCACAGCATGACTCTCAGTCATATCCACCTGACCAGTATCATTCTCCTGAGAATGCCTATGGCTCTCCATTGAGTGGCTCCTGCATAACCGATGATTTAAGCAGCTTCAAGCACAAACTGAGAGAGTTGGAAAGTGTAATGCTTGGCCCTGACTCTGATAATCTTGATAGTTATGACAGTGCCATAAGCAATGGAAACAACTTTGCTTCACTTGAGATGGACAGCTGGAGACAAACAATGGTGGCAATTTCTAGCAAAAACCTGAAGCACATCCTTGTTGCATGTGCCAAAGCCATTGCAGACAATGATTTGCTTATGGCACAGTGGCTGATGGATGAACTAAGGCAGATGGTGTCAGTTTCTGGCGATCCAATTCAACGGTTGGGAGCATACATGCTGGAAGGACTTGTTGCACGATTGGCTGCTTCTGGGAGTTCGATATACAATGCTTTAAGATGCAAAGAACCAGAGAGTGCTGAGCTTCTCTCCTACATGCACATACTGTATGAGGTTTGCCCCTACTTCAAATTCGGGTACATGTCTGCAAATGGAGCCATTGCAGAAGCTATGAAAGATGAAGAAAGGGTGCACATAATCGATTTCCAAATCGGTCAAGGAAGCCAGTGGATAACTTTAATTCAGGCTTTTGCAGCTAGACCTGGAGGGCCACCCCACATTCGGATTACAGGTATTGATGACTCACAATCAGCTTATGCCCGCGGTGGTGGACTGCACATAGTGGGAAGGAGGTTATCAAAGCTTGCTGAGCATTTTAAGGTGCCGTTTGAATTTCATGCTGCAGCTATCTCTGGCTGTGATGTTCAACTACACAACCTTGGAGTTCGACCGGGGGAAGCTCTGGCTGTGAATTTTGCATTCATGCTACATCACATGCCAGATGAAAGTGTGAGTACACAGAATCACAGGGATAGGTTGTTGAGGTTGGTTAGGAGCCTATCGCCGAAGGTGGTGACACTTGTTGAGCAGGAATCTAACACAAACACTGCTGCATTCTTTCCTCGTTTCCTTGAAACTCTGGACTATTACACAGCAATGTTTGAGTCAATAGATGTTACTCTTCCTAGAATTCATAAAGAGAGAATCAATGTTGAGCAGCATTGTTTGGCAAGAGATTTGGTTAACATCATAGCTTGTGAAGGGGTTGAGAGGGTGGAACGGCATGAGGTGCTTGGGAAGTGGAGGTCAAGATTTGCAATGGCCGGTTTCACTCCTTACCCTTTGAGTTCACTGGTGAATGGTACCATCAAGAAATTGCTTGAGAACTACAGTAATAGATATAGACTTGAAGAGAGAGATGGAGCTCTGTATCTGGGTTGGATGAATAGAGATTTGGTTGCTTCTTGCGCATGGAAATGA 1632 0.4449 MQASEQHRSSSMYYQPLQQIEAYCLPQYGNLNQQLYYHGGSHGTHFSTPSSSELYCTLESSSVAGSFTLYNSPSTVSFSPNGSPISQHDSQSYPPDQYHSPENAYGSPLSGSCITDDLSSFKHKLRELESVMLGPDSDNLDSYDSAISNGNNFASLEMDSWRQTMVAISSKNLKHILVACAKAIADNDLLMAQWLMDELRQMVSVSGDPIQRLGAYMLEGLVARLAASGSSIYNALRCKEPESAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEERVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSQSAYARGGGLHIVGRRLSKLAEHFKVPFEFHAAAISGCDVQLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPRIHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSNRYRLEERDGALYLGWMNRDLVASCAWK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2836g00009 543 Pfam GRAS domain family 173 543 IPR005202 -
Vium2836g00009 543 MobiDBLite consensus disorder prediction 78 101 - -
Vium2836g00009 543 ProSiteProfiles GRAS family profile. 164 543 IPR005202 -
Vium2836g00009 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 149 537 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2836g00009 Vium-Chr2836 46559 49878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2836g00009 12 543 GRAS Transcription Factor Family AT5G48150 66.543 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium2836g00009 GRAS 2.8e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2836g00009 - - gmx:100808300 1035.4