Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2836g00008 ATGGTTTCTTCAGACAAAAGTGAAGATCAAAATACCCCTTCTGATAAATTGCAGCATAGAGCGAGTCCTGATAGTGATGTTACATTGTCTCAAGGTCATGATACTAAAAATGATCTGTCCAAACCAGAGGGAGCCACAAGTATTCCTTCTGCTGTAGCTAAAAATGAAGAGGGGAAGGACTCCGATGCTACTGCCTGTGCCCTGGAATCAGATCAAGAAGGAAGCACGTGCTCATTACCACCTGAGAAACATTTGCAGAGCCCTGATACTCTTTTGAATGAATTGCCTCCATTGCAATCCAGTCAGGAAAGTCCCTCTATAATACGTGAAAAGGTATCTAAAGATGGCTATAACTGGCGAAAATATGGTCAGAAACATGTCAAGGGGAATGAATTTATAAGGAGCTATTACAAGTGTACATATCCAAACTGCCAGGCAAAAAAGCAATTGCAGCAGTCTAATAATGGGAACATCACAGATTGTGTTTCTATCGGACAGCATAATCATCCTAGGCCTCAATTGAACTCCACAGTATCAGTTGAGTGTGTTTTACCGGTTGTTGAACAAGCAGCACGCAAACCCTTGTTAGCCAATGTGAAAGACAAAACATCCGTTGAGCAAGGATGCACGTCTCAACAAATCAAGCCTTTACAGTCCTTTCCGACTGTAAAAGTGTCCCCAGTTAATGAGTTGAAAGCTGCACATTTACAATTGTCTAAGGCAAAGAATCAGATTCATGACAACGAAGATCCTGAGTCAAAGCGACTGAAGAAAGACAATAGTAATGTTGATGCCACTGGAATTACCATGTCAACTCGTGAATCTCGTGTTGTTGTTCAGACTTCAAGTGAGGTTGATTTGGTAAATGATGGGTATCGCTGGCGCAAATATGGGCAGAAGCTAGTTAAAGGGAATGCAAACCCAAGAAGTTATTATCGATGCTCAAATCCTGGATGCCCTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAATTGTAATAACTACCTATGAGGGACAACATGATCATGAACTCCCCCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATACTCACACAACGACCATGAATGGCAAGGCAGGAACCAAATCTGAAGATACTGCTGTTAATAGAGGGGAACAAACTGGCTTGAGCTCAGCAAGCAAATTAACAGAGCAACTAAATGGCAAGTCAACTACTAAGTCAAAGGTCGGTGATATTGTTGAGTTTGGCGTGAGCAGTCTTTCTAATGAGGGTCCTAAAATTAAATTAAGTGAGCAACAGCAAAAAGATAACTCAGGTACTAAAGACGATTCTGTCAGCAATGATGTTATATGCCATTCTAGTTCTGGAGTTCCGTGTAGATCCAATGAACAGCTGAAATGTGAGGTAAAACCTTTATCAGAAGGAACTAAGGATTGCTTTAACAAGGTTGCCATTCATGATACCTCCAGTACAGAAAGCGAATTTAATAAGCAATCAGCAGCTGATGCAGAACCGGTCCGAAGCTAA 1521 0.4149 MVSSDKSEDQNTPSDKLQHRASPDSDVTLSQGHDTKNDLSKPEGATSIPSAVAKNEEGKDSDATACALESDQEGSTCSLPPEKHLQSPDTLLNELPPLQSSQESPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTYPNCQAKKQLQQSNNGNITDCVSIGQHNHPRPQLNSTVSVECVLPVVEQAARKPLLANVKDKTSVEQGCTSQQIKPLQSFPTVKVSPVNELKAAHLQLSKAKNQIHDNEDPESKRLKKDNSNVDATGITMSTRESRVVVQTSSEVDLVNDGYRWRKYGQKLVKGNANPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHELPPGRTVTHNAATNTHTTTMNGKAGTKSEDTAVNRGEQTGLSSASKLTEQLNGKSTTKSKVGDIVEFGVSSLSNEGPKIKLSEQQQKDNSGTKDDSVSNDVICHSSSGVPCRSNEQLKCEVKPLSEGTKDCFNKVAIHDTSSTESEFNKQSAADAEPVRS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2836g00008 506 MobiDBLite consensus disorder prediction 486 506 - -
Vium2836g00008 506 SUPERFAMILY WRKY DNA-binding domain 109 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2836g00008 506 SMART WRKY_cls 113 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2836g00008 506 SMART WRKY_cls 288 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2836g00008 506 MobiDBLite consensus disorder prediction 1 22 - -
Vium2836g00008 506 MobiDBLite consensus disorder prediction 242 261 - -
Vium2836g00008 506 MobiDBLite consensus disorder prediction 420 447 - -
Vium2836g00008 506 MobiDBLite consensus disorder prediction 382 402 - -
Vium2836g00008 506 MobiDBLite consensus disorder prediction 68 83 - -
Vium2836g00008 506 MobiDBLite consensus disorder prediction 92 107 - -
Vium2836g00008 506 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 68 367 IPR044810 GO:0003700
Vium2836g00008 506 FunFam WRKY transcription factor 57 274 348 - -
Vium2836g00008 506 Gene3D WRKY domain 102 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2836g00008 506 Gene3D WRKY domain 275 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2836g00008 506 SUPERFAMILY WRKY DNA-binding domain 280 348 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2836g00008 506 ProSiteProfiles WRKY domain profile. 108 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2836g00008 506 MobiDBLite consensus disorder prediction 1 109 - -
Vium2836g00008 506 Pfam WRKY DNA -binding domain 114 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2836g00008 506 Pfam WRKY DNA -binding domain 289 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2836g00008 506 MobiDBLite consensus disorder prediction 240 262 - -
Vium2836g00008 506 FunFam WRKY transcription factor 100 173 - -
Vium2836g00008 506 ProSiteProfiles WRKY domain profile. 283 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2836g00008 Vium-Chr2836 40207 44972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2836g00008 98 370 WRKY Transcription Factor Family AT2G04880 49.821 1.44e-86 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium2836g00008 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2836g00008 K18834 - gmx:100781219 826.239