Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2836g00001 ATGCAATCAGATAATGGCAAGTTATTTATCGGTGGAATATCATGGGACACAAATGAGGAGCGACTCAGGGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGAGGATTTGGTTTTGTTGTTTTTTCCGATCCTGCTGTCGCTGAAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCCAGGGATGATCAGAACATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCACCAGGTCCTGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACGGAGAGTGATTTCAAAAAGTACTTTGATCAGTTTGGGACTATAACAGACGTTGTAGTTATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTATGATTCTGAGGAGGCTGTTGACAAAGTCTTACTAAAGACATTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAATTATCACCAGGACCAAGCCGCACCCCACTCGGTGGATATAACTATGGTCTCAGTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATAGTCCAAGTACTGTTGGAGGCTATGGACTTCGAGCGGATGGTAGATTCAGTCCTGTTGCCAGTGGTAGAAGTGGATTTGCTCCTTTTGGATCAGGTTATGGAATGAGCATGAATTTTGAGCCTGGTTTGAATGCTGGATTTGGGGGGAATGCAAATTTCAATAGCAATCTTAGCTATGGGCGGGGAGTAAATCCTTATTTTATTGGCAACTCCAATAGGTTTGGCAGTCCTGTTGGATTTGAAAGTGGTAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGTAATGGTGGCCTTAGTTATGGAACAAATTCTGCAAATTCCAATGCTTATATTGGATCAGGGAGTGGAAGTATTGGTGGGAATACATTTGGCAACACTGGAGTCAACTGGGGTGGTTCTTCAGCAATTTCTGCGCAGGGAGGAGGGAACAACATGTCACAAAGTAGTGGCAACCTGGGTTATGGAAGTGGTGACAATAATTATGGCTTGGGGACTGGAGGGTATGGAAGAAACACTGGTACCACTTTTGCACCAACATCTTCGTACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCAGACTTTTACAATAATAGTTCTGTTTATGGGGACCCCACTTGGCGCTCTTCAAATTCTGAGAGAGATGGATCTGGTCCCTTCGGTTATGGACTTGGTGGAGCAGCTTCTGATGTTTCTACCAAGAGTTCTCCAGGTTATGTTGGTGGTTATACTGTTAATAAGAGGCAGCCAAATAGGGGAATCGCGACATAG 1440 0.4375 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLSRVNSFLNGFTQGYSPSTVGGYGLRADGRFSPVASGRSGFAPFGSGYGMSMNFEPGLNAGFGGNANFNSNLSYGRGVNPYFIGNSNRFGSPVGFESGNGGNNSFFSSVTRNLWGNGGLSYGTNSANSNAYIGSGSGSIGGNTFGNTGVNWGGSSAISAQGGGNNMSQSSGNLGYGSGDNNYGLGTGGYGRNTGTTFAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSTKSSPGYVGGYTVNKRQPNRGIAT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2836g00001 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vium2836g00001 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Vium2836g00001 479 Gene3D - 4 88 IPR012677 -
Vium2836g00001 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vium2836g00001 479 SUPERFAMILY RNA-binding domain, RBD 104 202 IPR035979 GO:0003676
Vium2836g00001 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Vium2836g00001 479 Gene3D - 103 189 IPR012677 -
Vium2836g00001 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Vium2836g00001 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Vium2836g00001 479 CDD RRM2_Hrp1p 107 184 - -
Vium2836g00001 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vium2836g00001 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vium2836g00001 479 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Vium2836g00001 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Vium2836g00001 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Vium2836g00001 479 MobiDBLite consensus disorder prediction 429 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2836g00001 Vium-Chr2836 1595 6738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2836g00001 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 32.620 7.81e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2836g00001 K14411 - gmx:100795907 860.907