Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2835g00001 ATGGCTTCTGATTGTTCAAGATTTGTAAGATTTCAAGATGACCCTGAATTGGTAAAATTGCCGACTGCAAATAGTGGCAAGGGAATCAGGAACAATGGAACACGATTAGCTGAGATAAGGGGTAAAAAGGGTCTGACGGAAACAAGGAAGTTCTTGAAGGCTAGAGTATTGTCGAGAGTATTCTCAGAGGATTACGAGAGAGTTAGAAAAAAAACACTATTAGATCCCCGGGGACAAACCATTCACCGATGGAACAAAATTTTCTTGGTAGTATGTCTAGTTTCTTTGTTTGTGGACCCTCTGTTCTTTTATTTGCCACTAGTTCGAGATGAAGTGTGCATTGATATTGGAACAGCACTTGAAGTTTTCCTCACAATGATAAGATCAATGGCAGATGTGTTTTACATGATTCAGATTCTCATGAAGTTTCGAACAGCTTATGTTGCTCCTTCTTCTCGGGTATTTGGGAGGGGAGAACTTGTCATAGGCACTACCAAGATAGCTACTAGGTACCTGAGAAAGGGTTTTGGTCTAGACTTCATTGCTGCATTGCCTCTTCCTCAGGTGTTAATTTGGATTTTGATCCCCAATCTCGGAGGTTCAACCATGGCAAACACAAAGAATGTGCTTTGCTTTATCATCATTTTCCAATATTTACCAAGGTTGTTTTTGATTTTTCCACTTTCATCCCAAATTGTAAAAGCTACGGGAGTTGTGACAGAAACAGCATGGGCAGGGGCTTTTTACAACTTGGTTCTGTACATGTTGGCTAGCCATGTTTTAGGAGCTAGCTGGTACCTTCTATCAATTGAAAGACAAGAAGCCTGCTGGAGGAGTGTCTGTGATATGGAGCAATCTTGCCAATATGGATTCTTTGACTGCAAAAGGGTTGAAGACTCCTTCAGGGTCTCCTGGTTTATTGCAAGTAATATCACACTTTTATGCTCGCCAAAGGCTAAGTTCTATCAGTTTGGTATATACGGCGATGCTGTGGCATCCCAAGTTACCACCTCATCATTCTTTCACAAGTACTTCTTTTGTCTTTGGTGGGGCCTAAGGAATCTAAGTTCATTGGGACAAGGTCTTCTTACCAGCACTTTTGTTGGAGAAATAATGTTTGCCATTGTTGTTGCAACCCTTGGACTGGTTCTTTTTGCATTGCTTATTGGCAATATGCAGACATATCTCCAATCAACAACTGTTCGCTTGGAAGAGTGGAGGGTGAGGAGAACTGATACAGAACAATGGATGCATCACAGGCAGCTACCACCAGAACTTAGACAATCTGTGCGCAAATATAACCAATATAAATGGCTAGCCACACGAGGGGTAGACGAAGAAGCTCTTCTCAAAGGACTTCCTGCTGATCTTCGGAGAGACATCAAGCGCCACCTTTGTCTCGAACTAGTTCGACGAGTGCCATTGTTCGATCAAATGGACGAGAGAATGCTTGACGCAATATGCGAGAGGCTGAAGCCGGCGCTGTGCACGGAGAACACGTACCTAGTTCGCGAGGGCGATCCCGTGAACGAAACTCTCTTCATAATCAGGGGCCACCTCGATTCTTACACCACCAACGGAGGCCGCACCGGTTTCTTCAACTCGTGCCGCATCGGGCCCGGCGATTTCTGCGGCGAGGAGCTGCTGACATGGGCCCTGGGCCCACGGCCCAGCTTCATCCTGCCGTCCTCCACTCGAACCGTGAAGGCCATCTCCGAAGTGGAGGCCTTCGCCCTCATAGCGGAAGACCTAAAGTTCGTGGCGTCACAGTTCAGAAGACTACACAGCAAACAACTGAGACACAAGTTCAGGTTTTACTCGCACCAGTGGAGAACGTGGGCTGCGTGTTTCATACAAGCTGCATGGAGACGGTATAAGAAGCGAAAGGAAGCAGCAGAAGTGAGAGCTTTGAGCTACTACGTTGAGTCGAAGAGTGACAGTGAGACAGTAGGGTTGGTTGCGTATGGTACGAGGATGACTAGGAAGGGTTCTGTGCATTCTGATGAAGTTGTCAACGCTTTGCAGAAGCCAGAAGAACCAGATTTTTCTCTTGGTGAGTGA 2061 0.458 MASDCSRFVRFQDDPELVKLPTANSGKGIRNNGTRLAEIRGKKGLTETRKFLKARVLSRVFSEDYERVRKKTLLDPRGQTIHRWNKIFLVVCLVSLFVDPLFFYLPLVRDEVCIDIGTALEVFLTMIRSMADVFYMIQILMKFRTAYVAPSSRVFGRGELVIGTTKIATRYLRKGFGLDFIAALPLPQVLIWILIPNLGGSTMANTKNVLCFIIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAFYNLVLYMLASHVLGASWYLLSIERQEACWRSVCDMEQSCQYGFFDCKRVEDSFRVSWFIASNITLLCSPKAKFYQFGIYGDAVASQVTTSSFFHKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMFAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVRRTDTEQWMHHRQLPPELRQSVRKYNQYKWLATRGVDEEALLKGLPADLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLKPALCTENTYLVREGDPVNETLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALGPRPSFILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEAAEVRALSYYVESKSDSETVGLVAYGTRMTRKGSVHSDEVVNALQKPEEPDFSLGE 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2835g00001 686 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 682 - -
Vium2835g00001 686 CDD CAP_ED 475 606 IPR000595 -
Vium2835g00001 686 SUPERFAMILY cAMP-binding domain-like 405 601 IPR018490 -
Vium2835g00001 686 PRINTS EAG/ELK/ERG potassium channel family signature 139 148 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2835g00001 686 PRINTS EAG/ELK/ERG potassium channel family signature 344 361 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2835g00001 686 PRINTS EAG/ELK/ERG potassium channel family signature 388 397 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2835g00001 686 PRINTS EAG/ELK/ERG potassium channel family signature 438 445 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2835g00001 686 PRINTS EAG/ELK/ERG potassium channel family signature 370 381 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2835g00001 686 PRINTS EAG/ELK/ERG potassium channel family signature 256 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2835g00001 686 ProSiteProfiles cAMP/cGMP binding motif profile. 475 572 IPR000595 -
Vium2835g00001 686 Gene3D - 85 399 - -
Vium2835g00001 686 Gene3D Helix hairpin bin 402 466 - -
Vium2835g00001 686 Pfam Ion transport protein 84 402 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium2835g00001 686 FunFam Cyclic nucleotide-gated ion channel 1 402 466 - -
Vium2835g00001 686 SMART cnmp_10 475 606 IPR000595 -
Vium2835g00001 686 FunFam Cyclic nucleotide-gated ion channel 1 473 591 - -
Vium2835g00001 686 SUPERFAMILY Voltage-gated potassium channels 75 397 - -
Vium2835g00001 686 Gene3D Jelly Rolls 473 593 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2835g00001 Vium-Chr2835 13219 17797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2835g00001 50 683 Ion Channels AT2G28260 76.850 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2835g00001 K05391 - gmx:100791992 1216.45