Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2830g00002 ATGTTCTCAATCAAAATTCTACGTTCCGTCTCTAAAATCCTCTTGTCTTTCACTCTTCTGTGCACGTGCATCGCCATTGCCGACGATGCTGCGTTTATGTCCAAGCTCGCCAAAGCCTTGAGTCCCACGCCGTCGGGGTGGTCGGGGACCAGCTTCTGTCAGTGGAATGGCGTCAGGTGCACCACTAACGGCGTCTCCTCAATCAACATCGCTTCACGGTCGCTCACCGGAACGCTACCTCGGGATCTCAACTCCCTCTCCCAACTCACCTCGCTCTCTCTCCAGGGCAACGCGCTCTCCGGCGCTTTGCCTTCCCTTGCCAACCTCTCCATGCTGGAAACCGTGTTCCTCGGAGGCAACAACTTCACCTCCATTCCCGATGGTTGCTTCCAGGGTCTCACTAGCTTACAGAGCCTCAGCATGGCAGACAGCTTCAACCTCGCTCCATGGAGGATTCCCGCCGAGTTGACTCACTCCACCAACCTCGTCAAACTCGATCTCGGAAGCACAAACCTCATTGGTACCTTGCCTGACGTGTTTGACTCCCTTGTGAGTTTGCAGGAGCTTCGTCTCTCTTACAACAACCTCACTGGGGGTTTGCCAAAGACCTTCGCGGTATCTGGGATCCAGAATCTGTGGCTCAACAATCAGAAAGACGGGTTCGGGTTTTCGGGTACCATTGAGGTGCTTGCTTCCATGACCCGTTTGTCTCAGGTGTGGCTTTTTAAGAACCTTTTCACGGGTCCCATTCCGGATTTGTCAAATTGCACCACTTTGTTTGATCTGCAGCTAAGAGACAACCAGTTAACCGGTGTGGTTCCACCTTCTCTCATGTCGCTTTCTAGTTTGCAGATCGTTTCTTTAGACAACAATGTGCTTCAGGGTCCGGTTCCTTCGTTTGGGAAAGGTGTGAACGTCACTCTTGATGGGGTGAATAGTTTTTGTAGGAAAGACTCTGGACCTTGCGATTCTCGAGTAACGACTTTGCTTGATATTGCTAAAGATTTTGGTTATCCCCTTCAGTTGGCGCGTTCTTGGACCGGGAATGATCCTTGTGGGGATTGGAGTTTTGTTGTGTGCGCTACGGGAAAGATTGTTACTATGAATTTGGCGAAGCAGAATTTGGCGGGAACGATATCACCTGCATTTGCCAATTTAACTGATTTGAGAAACCTGTATCTCAGTGACAATCATTTAGGAGGATCAATACCTGGAGACTTGGTTAATTTAGCTCAGCTTGAGATTCTAGATGTGTCTAATAACAATCTATCTGGTGATGTTCCAAAGTTCCCAACCAAGGTGAAGTTCAATAATGCAGATAATCCTCTGCTTGGGCATTCTGGAGGTGGTGGTAGCGGTGGAACTACTCCGTCAAGCGGTTCTGGTGGCGCACCAAGTGGAAGTCCAAATGCAACGTCAGGCGGTTCTGCACTCTCTCCTGCTTGGATCGGAGGTATTGTTGTTATTGCAGTGTTTTTTGTTGCGGTGGTCGTATTTGTCTTTTGCAAGTGTCAAGCTAAAAACCGTCACGGCAAGTTTGGGAGGGTTAATAATCCCGAAAATGGGAAAGGAGAGGTTAAGATTGATATGATGAGCGTTACAAATTCCAATGGATATGGTGGCGTCCCGAGCGAGTTGCATAGCCAGGGCAGTGAGCGTAGTGATATTCATGTTTTTGAGGGTGGGAATGCTACTATTTCAATTCAGGTTCTTCGGCAAGTAACGGATAATTTTAGTGAGGAAAACATTTTAGGTAGGGGAGGGTTTGGGGTTGTTTATAAAGGGGAATTGCATGATGGAAGTAACATTGCCGTGAAGAGAATGGAATCTGTTGCAACCGGGAGCAAGGGATTGAATGAGTTCCAAGCAGAGATTGCAGTTCTCAGTAAAGTCAGACACAGACATTTAGTTGCTCTTTTAGGATATTGCATAAACGGCAACGAAAGGCTTTTGGTGTATGAGTATATGCCTCAAGGGACGCTAACACAACACCTGTTTGATTGGCGTGAAAATGGATGTGCTCCTTTGACTTGGAAACAAAGGGTAACCATAGCTTTGGACGTAGCACGAGGAGTGGAATACTTGCACCGCCTAGCTCAACAAAGCTTCATTCACAGAGACTTAAAACCCTCAAACATACTTTTGGGAGATGACATGAGAGCCAAGGTTGCAGATTTTGGTTTGGTTAAAATTATTACACCAGAAGGAAATGATTCTGTCTGGACACGAGTGGCGGGAACATTTGGATATCTGGAACCTGAATATGCAGCTACGGGAAGAGTGACGAGGAAAGTGGACGTGTACGCATTCGGAGTAGTTTTGATGGAACTAATTAGCGGTAGAAAGGCATTGGACAGTAGTTTGCCAGAAGAAATGCCTCATTTGGTTTCATGGTTCTGTAGGATTGTAGACAACATGGAAAACATCTCACTGGTAGCTGATGAAAGTCTAAACCTTGACAGTGAAAACATGGAGAGCATATGTAAAGTGGCTGAGCTGGCAGCTCATTGCACTACTCCTGAACCTCATAAAAGACCTGATATGTGGCATGCAGTGAATGTCTTGGTTCCTTTAGTGGAGCAATGGAACCCCGCCTGTATCCATGAACAACATGAAGAAAAAGGTTGTGACGTGATCTATGAAGGACATTATGATATGTCTATCTCAGAAATTTTCTCCGGACGTTGA 2688 0.468 MFSIKILRSVSKILLSFTLLCTCIAIADDAAFMSKLAKALSPTPSGWSGTSFCQWNGVRCTTNGVSSINIASRSLTGTLPRDLNSLSQLTSLSLQGNALSGALPSLANLSMLETVFLGGNNFTSIPDGCFQGLTSLQSLSMADSFNLAPWRIPAELTHSTNLVKLDLGSTNLIGTLPDVFDSLVSLQELRLSYNNLTGGLPKTFAVSGIQNLWLNNQKDGFGFSGTIEVLASMTRLSQVWLFKNLFTGPIPDLSNCTTLFDLQLRDNQLTGVVPPSLMSLSSLQIVSLDNNVLQGPVPSFGKGVNVTLDGVNSFCRKDSGPCDSRVTTLLDIAKDFGYPLQLARSWTGNDPCGDWSFVVCATGKIVTMNLAKQNLAGTISPAFANLTDLRNLYLSDNHLGGSIPGDLVNLAQLEILDVSNNNLSGDVPKFPTKVKFNNADNPLLGHSGGGGSGGTTPSSGSGGAPSGSPNATSGGSALSPAWIGGIVVIAVFFVAVVVFVFCKCQAKNRHGKFGRVNNPENGKGEVKIDMMSVTNSNGYGGVPSELHSQGSERSDIHVFEGGNATISIQVLRQVTDNFSEENILGRGGFGVVYKGELHDGSNIAVKRMESVATGSKGLNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDWRENGCAPLTWKQRVTIALDVARGVEYLHRLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKIITPEGNDSVWTRVAGTFGYLEPEYAATGRVTRKVDVYAFGVVLMELISGRKALDSSLPEEMPHLVSWFCRIVDNMENISLVADESLNLDSENMESICKVAELAAHCTTPEPHKRPDMWHAVNVLVPLVEQWNPACIHEQHEEKGCDVIYEGHYDMSISEIFSGR 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2830g00002 895 SMART serkin_6 578 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2830g00002 895 MobiDBLite consensus disorder prediction 451 474 - -
Vium2830g00002 895 CDD STKc_IRAK 584 848 - -
Vium2830g00002 895 PANTHER OSJNBA0070M12.3 PROTEIN 13 888 - -
Vium2830g00002 895 Pfam Leucine rich repeat 87 142 IPR001611 GO:0005515
Vium2830g00002 895 Pfam Leucine rich repeat 367 423 IPR001611 GO:0005515
Vium2830g00002 895 Pfam Leucine rich repeat N-terminal domain 326 360 IPR013210 -
Vium2830g00002 895 Pfam Leucine rich repeat N-terminal domain 28 60 IPR013210 -
Vium2830g00002 895 SMART LRR_typ_2 109 132 IPR003591 -
Vium2830g00002 895 SMART LRR_typ_2 183 206 IPR003591 -
Vium2830g00002 895 SMART LRR_typ_2 386 410 IPR003591 -
Vium2830g00002 895 SMART LRR_typ_2 86 108 IPR003591 -
Vium2830g00002 895 FunFam Receptor-like kinase TMK4 27 320 - -
Vium2830g00002 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Vium2830g00002 895 Gene3D Phosphorylase Kinase; domain 1 542 655 - -
Vium2830g00002 895 MobiDBLite consensus disorder prediction 445 474 - -
Vium2830g00002 895 FunFam receptor protein kinase TMK1 542 655 - -
Vium2830g00002 895 FunFam PTI1-like tyrosine-protein kinase 3 656 866 - -
Vium2830g00002 895 Gene3D Ribonuclease Inhibitor 323 447 IPR032675 -
Vium2830g00002 895 ProSiteProfiles Protein kinase domain profile. 578 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2830g00002 895 SUPERFAMILY Protein kinase-like (PK-like) 555 864 IPR011009 -
Vium2830g00002 895 ProSitePatterns Protein kinases ATP-binding region signature. 584 606 IPR017441 GO:0005524
Vium2830g00002 895 Gene3D Ribonuclease Inhibitor 28 320 IPR032675 -
Vium2830g00002 895 SUPERFAMILY L domain-like 23 430 - -
Vium2830g00002 895 FunFam Leucine-rich repeat receptor-like kinase 324 447 - -
Vium2830g00002 895 Gene3D Transferase(Phosphotransferase) domain 1 656 879 - -
Vium2830g00002 895 Pfam Protein kinase domain 579 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2830g00002 Vium-Chr2830 8252 11080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2830g00002 67 855 Receptor kinase-like Gene Family AT5G07280 32.266 4.88e-100 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vium2830g00002 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2830g00002 K00924 - gmx:100781851 1340.87