Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2830g00001 ATGGCCACTTCCAGATTAAAACGGAAAACCCTACATTCTCTCTGTCAGCTCTTTCTTCTCTTTTTCACTCTCTCTTCCACCGCCATTGCCGACGATGCCGCGTTCATGTCCAAGCTCGCCAAAGCCTTGAGTCCCACGCCGTCCGGGTGGTCGGGGACCAGCTTCTGTCAGTGGAATGGCGTAAAGTGCACCAACAACCGCGTCTCCTCAATCAACATCGCTTCACGGTCGCTCACCGGAACGCTACCTCCGGATCTCAACTCCCTCTCCCAACTCACCTCGCTCTCTCTCCAGGGCAACGCGCTCTCCGGCGCGTTGCCTTCCCTTGCCAACCTCTCCATGCTGGAAACCGTGTTCCTCGGAGGCAACAACTTCACCTCCATTCCCGATGGTTGCTTCCAGGGTCTCTCTAGCTTACAGAGCCTCAGCATGGCAGACAGCTTCAACCTCGCTCCATGGAGGATTCCCGCCGAGTTGACTCAGTCCACCAACCTCGTCAAACTCGACCTCGGAAACACAAACCTCATTGGTACCTTGCCTGACGTGTTCGACTCCCTTGTGAGTTTGCAGGAGCTTCGTCTCTCTTACAACAACCTTACTGGGGGTTTGCCAAAGACCTTCGCGGGATCTGGGATCCAGAATCTGTGGCTCAACAATCAGAACGACGGGTTCGGGTTTTCGGGTACCATTGAGGTGCTTGCTTCCATGACCCGTTTGTCTCAGGTTTGGTTTCAGAAGAACCTTTTCACCGGTTCCATTCCGGATTTGTCAAATTGCACCGCTCTGATTGATCTGCAGCTGAGAGACAACCAGTTAACCGGTGTGGTTCCACCTTCTCTCATGTCCCTTTCTAGTTTGCAGAACGTTTCTTTAGACAACAATGTGCTTCAGGGTCCGGTTCCTTCTTTTGGGAAAGGTGTGAAGGTCACTCTTGATGGGGTGAATAGTTTTTGTAGGAAAGACTCTGGACCTTGCGATTCTCGAGTAACGACTTTGCTTGATATTGCTAAAGATTTTGGTTATCCCCTTCAGTTGGCGCGTTCTTGGACCGGGAATGATCCTTGTGGGGATTGGAGTTTTGTTGTGTGCGCTACGGGAAAGATTGTTACTATGAATTTGGCGAAGCAGAATTTGACGGGAACGATATCACCTGCATTTGCCAATTTAACTGATTTGAGAAACCTGTATCTCAATGACAATCATTTAGGAGGATCAATACCTGGAGACTTGGTTAATTTAGCTCAGCTTGAGATTCTAGATGTGTCTAATAACAATCTATCTGGTGATGTTCCAAAGTTCCCAACCAAGGTGAAGTTCAATAATGCAGGTAATCCTCTGCTTGGGCATTCTGGAGGTGGTGGTAGCGGTGGAACTACTCCGTCAAGCGGTTCTGGTGGCGCACCAAGTGGAAGTCCAAATGCAACGTCAGGCGGTTCTGCACTCTCTCCTGCTTGGATCGGAGGTATTGTTGTTATTGCAGTGTTTTTTGTTGCGGTGGTCGTATTTGTCTTTTGCAAGTGTCAAGCTAAAAACCGTCACGGCAAGTTTGGGAGGGTTAATAATCCCGAAAGTGGGAAAGGAGAGGTTAAGATTGATATGATGAGCGTTACAAATTCCAATGGATATGGTGGCGTCCCGAGCGAGTTGCATAGCCAGGGCAGTGAGCGTAGTGATATTCATGTTTTTGAGGGTGGGAATGCTACTATTTCAATTCAGGTTCTTCGGCAAGTAACGAATAATTTTAGTGAGGAAAACATTTTAGGTAGGGGAGGATTTGGGGTTGTTTATAAAGGGGAATTGCATGATGGAAGTAAAATTGCCGTGAAGAGAATGGAATCTGTTGCAACCGGGAGCAAGGGATTGAATGAGTTCCAAGCAGAGATTGCAGTTCTCAGTAAAGTCAGACACAGACATTTAGTTGCTCTTTTAGGATATTGCATAAACGGCAACGAAAGGCTTTTGGTGTATGAGCATATGCCTCAAGGGACGCTAACACAACACCTGTTTGATTGGCGTGAAAATGGATGTGCTCCTTTGACTTGGAAACAAAGGATAGCAATAGCTTTGGATGTAGCTCGAGGAGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCATAGGGACTTGAAACCCTCGAACATATTATTGGGTGATGACATGAGAGCCAAGGTTGCAGATTTTGGTTTAGTAAAAAATGCACCAGATGGGAAATATTCTGTCGAGACAAAGTTGGCTGGAACATTTGGATATTTGGCACCTGAATATGCAGCTACCGGAAGAGTGACTACCAAAGTAGACGTGTACGCATTTGGAGTAGTTTTGATGGAACTGATCACAGGTAGAAGGGCATTGGACGATACTGTGCCTGATGAAAGGTCTCACCTGGTTTCCTGGTTCCGTAGGGTACTGATTAACAAGGAGAACATCCCCAAGGCTATTGATCAAACTCTCGATCCTGATGAGGAAACCATGGAAAGCATATATAAAGTGGCTGAACTGGCAGGTCATTGCACTGCTCGTGAACCGTATCAAAGGCCTGATATGGGTCATGCGGTGAATGTCTTGGTTCCTCTCGTAGAGCAATGGAAGCCTACCAGCCACGAAGAAGAAGAAGGTTATGGCATTGACATTCACATGAGCCTTCCTCAAGCTCTGCAAAGATGGCAAGCTAACGAAGGCACTTCCACAATGTTTGACATGTCCATCTCACAAACTCAATCAAGCATTCCTGCAAAACCTTCAGGATTTGCCGACTCTTTTGATTCGATGGATTGCCGATGA 2787 0.4729 MATSRLKRKTLHSLCQLFLLFFTLSSTAIADDAAFMSKLAKALSPTPSGWSGTSFCQWNGVKCTNNRVSSINIASRSLTGTLPPDLNSLSQLTSLSLQGNALSGALPSLANLSMLETVFLGGNNFTSIPDGCFQGLSSLQSLSMADSFNLAPWRIPAELTQSTNLVKLDLGNTNLIGTLPDVFDSLVSLQELRLSYNNLTGGLPKTFAGSGIQNLWLNNQNDGFGFSGTIEVLASMTRLSQVWFQKNLFTGSIPDLSNCTALIDLQLRDNQLTGVVPPSLMSLSSLQNVSLDNNVLQGPVPSFGKGVKVTLDGVNSFCRKDSGPCDSRVTTLLDIAKDFGYPLQLARSWTGNDPCGDWSFVVCATGKIVTMNLAKQNLTGTISPAFANLTDLRNLYLNDNHLGGSIPGDLVNLAQLEILDVSNNNLSGDVPKFPTKVKFNNAGNPLLGHSGGGGSGGTTPSSGSGGAPSGSPNATSGGSALSPAWIGGIVVIAVFFVAVVVFVFCKCQAKNRHGKFGRVNNPESGKGEVKIDMMSVTNSNGYGGVPSELHSQGSERSDIHVFEGGNATISIQVLRQVTNNFSEENILGRGGFGVVYKGELHDGSKIAVKRMESVATGSKGLNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEHMPQGTLTQHLFDWRENGCAPLTWKQRIAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETKLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTVPDERSHLVSWFRRVLINKENIPKAIDQTLDPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEEGYGIDIHMSLPQALQRWQANEGTSTMFDMSISQTQSSIPAKPSGFADSFDSMDCR 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2830g00001 928 ProSiteProfiles Protein kinase domain profile. 581 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2830g00001 928 Pfam Leucine rich repeat N-terminal domain 329 363 IPR013210 -
Vium2830g00001 928 Pfam Leucine rich repeat N-terminal domain 31 63 IPR013210 -
Vium2830g00001 928 SMART LRR_typ_2 186 209 IPR003591 -
Vium2830g00001 928 SMART LRR_typ_2 389 413 IPR003591 -
Vium2830g00001 928 SMART LRR_typ_2 112 135 IPR003591 -
Vium2830g00001 928 SMART LRR_typ_2 89 111 IPR003591 -
Vium2830g00001 928 SUPERFAMILY Protein kinase-like (PK-like) 558 857 IPR011009 -
Vium2830g00001 928 CDD STKc_IRAK 587 860 - -
Vium2830g00001 928 Pfam Leucine Rich Repeat 188 208 IPR001611 GO:0005515
Vium2830g00001 928 ProSitePatterns Protein kinases ATP-binding region signature. 587 609 IPR017441 GO:0005524
Vium2830g00001 928 SMART serkin_6 581 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2830g00001 928 FunFam Receptor-like kinase TMK4 30 323 - -
Vium2830g00001 928 Gene3D Transferase(Phosphotransferase) domain 1 659 881 - -
Vium2830g00001 928 Pfam Protein tyrosine and serine/threonine kinase 584 855 IPR001245 GO:0004672|GO:0006468
Vium2830g00001 928 MobiDBLite consensus disorder prediction 454 477 - -
Vium2830g00001 928 SUPERFAMILY L domain-like 29 433 - -
Vium2830g00001 928 PANTHER OSJNBA0070M12.3 PROTEIN 17 928 - -
Vium2830g00001 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 706 718 IPR008271 GO:0004672|GO:0006468
Vium2830g00001 928 FunFam receptor protein kinase TMK1 545 658 - -
Vium2830g00001 928 FunFam Leucine-rich repeat receptor-like kinase 327 450 - -
Vium2830g00001 928 Gene3D Phosphorylase Kinase; domain 1 545 658 - -
Vium2830g00001 928 Pfam Leucine rich repeat 90 144 IPR001611 GO:0005515
Vium2830g00001 928 Pfam Leucine rich repeat 370 426 IPR001611 GO:0005515
Vium2830g00001 928 MobiDBLite consensus disorder prediction 448 477 - -
Vium2830g00001 928 Gene3D Ribonuclease Inhibitor 31 323 IPR032675 -
Vium2830g00001 928 MobiDBLite consensus disorder prediction 907 928 - -
Vium2830g00001 928 Gene3D Ribonuclease Inhibitor 326 450 IPR032675 -
Vium2830g00001 928 FunFam receptor protein kinase TMK1 659 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2830g00001 Vium-Chr2830 1789 5483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2830g00001 70 857 Receptor kinase-like Gene Family AT5G07280 32.890 1.45e-96 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vium2830g00001 PK_Tyr_Ser-Thr 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2830g00001 K00924 - gmx:100781851 1576.22