Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2829g00011 ATGCACTTCACTTCCTTCCTCTACAGAACACTACTTCTCACTCTCTATATCACCCCATCCATTTCTCTTTTCTTCTTCCACCTCATGGCGAACACATTATCGCCATATCTATCACCGTCGTTATCAGTAGCAGCGATAGTAGTATTGTTGGTTTCATGTGGAATATTAATTCAGGAATGCGAGGGCCAGGGCCAGCAAGCCAAGGCTTTGCCTCCAGCAGGGGAAACTTGTAACGGGATTTTCATTTCCTATGACTTTCTCAAACGAACCAAAGAATACCCTCACGTGAAGAATGTGACGGCGCAGTCCTGGGCCTTCAGTTCCACCGCATCAGTTCTCAACACAGGTAAAGAAGTGTTTAAGGCATGGAAGCTGTTCATAGAGTTTCAACACGACGAGATTCTAGTCTCCGTCGGCGGAGGCAATATAGAAGAGGCAACCGAGTTCCCCGCTTCGGTAGGAAATGGCACTACCTTCGTCGGAGCTTCTCAGCCAGACTTGGATAGCGCAATCAACACAGCTCAAGATTTAAGCCAGATCCAAGCCGTCATCGACCTTACCGGTACCCAGTTTGGAGTAAAGCCCCCTACGGTTCCTATGCCAAAAACCATCAAGTTGGTAAACGATGGTTACAAATGCCCCAAACCAACTACCCACAAAAGTTCCATGTATGCATGCTGCAAAAAGGACCCTAAAGCCAAGATTGCAGTTGCTAAGAAGACAAAATTCTTAGCACGGCAAAAAGGGGATCTTCTGATCTCCTATGACGTTACTCAAGTGTATGACGATAATTATTTGGTTCAGGTGTTGATGGAGAACGAACACTTTTTGGGACGGTTGGATCATTGGAACTTGACGTGGGAGTGGACAAGAGGGGAATTTATATACTCCATGAAAGGTGCCTTCACACGTGAGATAGAGTCCCTGGGTTGCATCAATGGCGAGGCAGGAAAGTATTACGCGGGATTGGATTTCTCTAAAGTGCTTAACTGTCAGAAGAATCCTATAGTGAGTGATTTGCCTTCAGAGAAATATAACGACAGTGAACTTGGAAAGATACCTAACTGTTGCAAAGACGGAAATCTTTTACCCATCATTATGGACCCCAGCAAATCCAAGTCTGCTTTCACAATGCAAGTGTACAAAATTCCACCTGATTTAAACAAAACGGCAATTTACCCTCCTGAGAAATGGCAAATTACGGGCATTCTGAACCCACATTACAAATGTGGGTTACCCAGAAGAGTGGAGCCTGCTCGATTTCCAGACTCCAGAGGACTCGAAGCAACGGTTATTGCCATTTCAAGTTGGCAAATAGTCTGCAATATCACTAAGCCAACCAAAAGGAGCACTCGCTGTTGTGTTTCTTTCTCCTCTTATTACAATGACTCCGTAGTCCCTTGTAACACCTGTGCCTGTGGCTGTGATTCTGTAAACACCAAAAAATGCAATCCCAATTCTCCGGCAATGCTTCTTCCTGCAGAAGCTCTTCTTCTACCCTTTGAAAACAGGTCGGCAAAGACGGTTGCTTGGGCCAAAATGAAGCATTTTACGATTCCCAAAAGATTACCCTGTGCCGACAACTGCGAAGTCAGCATAAACTGGCATGTGGTTTCCGATTACAAAGGTGGGTGGAGTGCTCGAATCACTATGTTCAACTGGATGACTACCCAGTTTGAGAATTGGTTCACCGCCCTCCAATTCAAGAAGACTCCTCGCGGCTACCAAGCAGCATATTCTTTTAATGCAACCACCATTCCAAAGCTCAACCATACTATTTTCTTGCAAGGATTTATCGGAGCAAACTATCTTATAGCTTTGGACAATAAATCAAACCCACATGTTCCCGGAAAACAGCAATCCGTTATTTCCTTTACCAAGAAGTATTCACCAAATATCAAAATTGCAAAAGGAGATGGGTTCCCTTCCAAGGTCTTTTTTAACGGCGAAGAGTGTTCTCTTCCTACCAGATTCCCTGTCAAAAGTGGAAACCAACCTAATGTTGTTGTAGATTTAGCATACCAACTCTTGTTTTTCGCTTTGGCTTTTACAATCACTCCAGTGCTGTAA 2070 0.444 MHFTSFLYRTLLLTLYITPSISLFFFHLMANTLSPYLSPSLSVAAIVVLLVSCGILIQECEGQGQQAKALPPAGETCNGIFISYDFLKRTKEYPHVKNVTAQSWAFSSTASVLNTGKEVFKAWKLFIEFQHDEILVSVGGGNIEEATEFPASVGNGTTFVGASQPDLDSAINTAQDLSQIQAVIDLTGTQFGVKPPTVPMPKTIKLVNDGYKCPKPTTHKSSMYACCKKDPKAKIAVAKKTKFLARQKGDLLISYDVTQVYDDNYLVQVLMENEHFLGRLDHWNLTWEWTRGEFIYSMKGAFTREIESLGCINGEAGKYYAGLDFSKVLNCQKNPIVSDLPSEKYNDSELGKIPNCCKDGNLLPIIMDPSKSKSAFTMQVYKIPPDLNKTAIYPPEKWQITGILNPHYKCGLPRRVEPARFPDSRGLEATVIAISSWQIVCNITKPTKRSTRCCVSFSSYYNDSVVPCNTCACGCDSVNTKKCNPNSPAMLLPAEALLLPFENRSAKTVAWAKMKHFTIPKRLPCADNCEVSINWHVVSDYKGGWSARITMFNWMTTQFENWFTALQFKKTPRGYQAAYSFNATTIPKLNHTIFLQGFIGANYLIALDNKSNPHVPGKQQSVISFTKKYSPNIKIAKGDGFPSKVFFNGEECSLPTRFPVKSGNQPNVVVDLAYQLLFFALAFTITPVL 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2829g00011 689 Pfam COBRA-like protein 265 444 IPR006918 GO:0010215|GO:0016020
Vium2829g00011 689 PANTHER COBRA-LIKE PROTEIN 7 46 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2829g00011 Vium-Chr2829 78334 80700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2829g00011 71 674 COBRA Gene Family AT3G20580 55.829 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2829g00011 - - gmx:100799716 1019.99