Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2829g00010 ATGGCAACACACCAATCTCTGTTAGACAACAACCCTAGAAAATCCGTTTCCAAAACTATATGCTTAATCTTCTCTGTAGCTGTTGTGCTAACTTCATCAGCTCTTATTGCTTCCTATCTCTCAAAACCCTCTCCCTTATTCAACCACGGCATTTCTCACCGTGTTTGTGATCATGCAATTGATCATTCAGCCTGCTTGGCACATGTCTTGGAAGTGGAACAAGATCCGATGTTCGGTGCCACACAAAACCAAAGATTCGGATTGCTCCAATCCTTTTTAATGAAATCCACCTCACACATTGAGAGAGTGATAGGGGCAGCCAACGCTATGAGGGTGAGGATGAACAATCCAGGAGAAGAAGCCGCTTTGCGGGATTGCGTGGAGCTGATGGAGTTGTCCGTGGACAGAGTTTGGGACTCAAAGGCCAGCCTAACCAAAGGGACCACTGATTCGGCGCAAGATGTCCACACTTGGCTGAGCAGCGTGCTCACCAATCATGTAACTTGCTTGGAGGGACTGAAGGGGCGAGCTCGAAGGGTGATGGAGGCAGAGGTTCAGGACTTGATCTCGAGAGCAAGAAGCTCTTTAGCCATGTTCGTTGCTGTTTTGCCTCCAAATCCGGAGGTTGAAGTCGTGTCGCTAAATGGGAAGTTTCCCTCATGGGTGAGAAGCAAGGATCGGAGGCTGTTAGAGTCTTCGGCCGGAGAAATCAAGGCGAACGTTGTGGTGGCTCAGGACGGGAGTGGTGACTTTTTTACTGTTGCTGAAGCTTTGGCCACGGTACCCGATAAAAGCAAGAAGAGGTATGTTATTCATGTGAAGAACGGAACGTATATAGAGAAACTTGAAATTGGTAAGAAACAGAAGAACGTCATGCTGGTGGGTGACAGCATGGATTTAACTATAATCACCGGAAACGTGAGCGTCACCAACGAAACGAGCACCTTTCACACTGCTACTGTTGCGGCGGTTGGGGATGGGTTCATAGCCCAAGACATTTGGTTTAAAAATTTTGCAGGCCCAGAAAAGCACCAGGCAGTCGCACTTCGCGTGGGCGCTGATCAATCCGTGATAAATCGTTGCCGCGTGGACGCATATCAGGACACGCTCTACGTCCATTCCAACAGACAGTTCTACCGCGACTCCTACGTTACGGGCACCGTTGACTTCATCTTTGGAAACGCAGCTGCCGTCTTCCAGAACTGTACGCTGGAGGCCCGAAAGCCCATGAAAGGTCAGAAAAACATGGTGACGGCCCAATCACGAACAGATCCAAACCAAAACACAGGAATTTCAATTCAACAGTGTAACGTCTCCCCCAGTGAGGATCTCAGGCCCGAGATAAAGTCTTTCAAAACATATCTGGGCCGGCCGTGGCAGAACTTCTCGAGGACTGTTGTTATGCAATCCTTTCTGGACAAGCATATTGACCCAGAGGGATGGTCGGAATGGGATGACAAACATAAGAGCTATTTGGAAACCCTGTATTATGGAGAGTACATGAACAGAGGACCTGGTGCCGGTACCGGTGGAAGAGTGAATTGGACTGGTTACCACATCATCAAAAGTGCAGCCGTGGCCAACCAGTTCACAGTAAAAAACCTCATCCAAGGCGATGTTTGGTTGAAGAACAGTGGGGTCAACTTCATTGAAGGTCTATAA 1662 0.4862 MATHQSLLDNNPRKSVSKTICLIFSVAVVLTSSALIASYLSKPSPLFNHGISHRVCDHAIDHSACLAHVLEVEQDPMFGATQNQRFGLLQSFLMKSTSHIERVIGAANAMRVRMNNPGEEAALRDCVELMELSVDRVWDSKASLTKGTTDSAQDVHTWLSSVLTNHVTCLEGLKGRARRVMEAEVQDLISRARSSLAMFVAVLPPNPEVEVVSLNGKFPSWVRSKDRRLLESSAGEIKANVVVAQDGSGDFFTVAEALATVPDKSKKRYVIHVKNGTYIEKLEIGKKQKNVMLVGDSMDLTIITGNVSVTNETSTFHTATVAAVGDGFIAQDIWFKNFAGPEKHQAVALRVGADQSVINRCRVDAYQDTLYVHSNRQFYRDSYVTGTVDFIFGNAAAVFQNCTLEARKPMKGQKNMVTAQSRTDPNQNTGISIQQCNVSPSEDLRPEIKSFKTYLGRPWQNFSRTVVMQSFLDKHIDPEGWSEWDDKHKSYLETLYYGEYMNRGPGAGTGGRVNWTGYHIIKSAAVANQFTVKNLIQGDVWLKNSGVNFIEGL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2829g00010 553 Pfam Pectinesterase 240 539 IPR000070 GO:0030599|GO:0042545
Vium2829g00010 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Vium2829g00010 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 202 IPR035513 -
Vium2829g00010 553 PANTHER PECTINESTERASE 25 543 - -
Vium2829g00010 553 FunFam Pectinesterase 234 553 - -
Vium2829g00010 553 Pfam Plant invertase/pectin methylesterase inhibitor 54 189 IPR006501 GO:0004857
Vium2829g00010 553 SMART PMEI_2 47 198 IPR006501 GO:0004857
Vium2829g00010 553 NCBIfam pectinesterase inhibitor domain 23 185 IPR006501 GO:0004857
Vium2829g00010 553 SUPERFAMILY Pectin lyase-like 238 552 IPR011050 -
Vium2829g00010 553 CDD PMEI-like_4 58 202 - -
Vium2829g00010 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 198 IPR035513 -
Vium2829g00010 553 Gene3D - 234 553 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2829g00010 Vium-Chr2829 70432 77725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2829g00010 3 553 Carbohydrate Esterase AT1G11580 50.980 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2829g00010 K01051 - gmx:100815836 774.237