Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2829g00009 ATGGCTATCCAACAATCTCTGCTAGACAAGCCTAGAAATTCTATTTCCAAAACAATCTGTTTAGTCTTTTCTGTAGCTGCTGTAATATGTTCATCAGCCTTTGTTGGTTCCTATCTCATCAAATCCAGTTCCTTCCTTAACCAGTCTCCTCTTCAACGTCTCTGTCGCCATGCACTTGATAATCCATCATGCTTAGCACATGTCTCAGAAGTGGCTCAAGATCCCATCTTGACCACCACAAAAGACTACAACTTGAATTTGTTCCACTCTTTCTTAATGAAATCCACTTCACACATTCAGACAGTTATGAACACAGCCAGTTCCATCAAACTCAGGATTAACAATCCCCGAGAGGAAGCAGCTTTGAACGACTGTGTGGAGCTGATGGACTCATCCATCAACAGAGTTTGGGACTCGATGGTGACTCTAACAAAAGAAACCGATGAGTCACAGCAGGATGCACACACATGGCTAAGTAGCGTGCTCACTAACCATGCTACTTGTTTGGATGGGTTAGAGGGGACAGCTAGAACCCTTATGCAGGATGAACTCGAGGACTTGAAATCCAGAGCGAAAACCATTCTGGCCATGTTCCTTGCTGTTTTACCTCAGAGGGTCGAACCAATCATTGATGAACCACTGAACGGGGAGTTTCCCTCGTGGTTGAGCAGCAAGGATAGGAAGCTTTTGGAGTCCAGTGCTTCGAACATCAATGCCAACGTTGTCGTGGCCAAGGACGGGAGTGGCAAGTTTAAGACTGTGGCTCAGGCTGTGGCATCTGCACCTGATAACGGGAAGACAAGGTATGTTATTTACGTGAAAAAGGGAACATATAAAGAGAATGTTGAAATCAGTAGTAAGAAGACGAACGTGATGCTGGTTGGAGATGGTAAGGATGTAACTATAATTACTGGAAGCTTGAATTATATTGACGGAACGACCACGTTTAAGTCCGCCACTGTAGCTGCTGTGGGGGATGGATTTATAGGTCAAGACATATGGTTCCAGAACACTGCAGGTCCACAGAAGCACCAAGCAGTGGCTCTTCGAGTAGGTGCGGATCGATCCGTCATAAACCGATGCCGGATCGATGCCTTCCAAGACACTCTCTATGCCCACTCTAACAGGCAGTTTTACAGAGACTCCTATATCACTGGCACCGTTGATTTCATATTTGGAAATGCAGCGGTTGTGTTTCAAAAGTGCAACATTGCGGCCAGAAAGCCCATGAGTAACCAGAACAACATGGTGACAGCCCAGGGACGGGAAGATCCAAACCAGAACACAGGAACTTCGATTCAACAATGTAACATAATACCAAGTTCGGATCTGAAGCCTGTGGTAGGGTCCATCAAGAGTTTCCTAGGCCGGCCATGGAAGAAGTACTCGAGAACCGTTGTGATGCAGTCCACAATAGAGAGCCATGTTGACCCAACAGGATGGGCAGAGTGGAATGCCGATAGTAAGGACTTTTTGAACACGTTGTATTATGGAGAGTACATGAACAAAGGAGCAGGTGCTGGTACCAGCAAGAGAGTGAAGTGGCCCGGTTACCATATCATCACAAGTGCAGCAGAAGCTAGCAAGTTCACGGTAACACAGCTTATTCAAGGAAATGTTTGGCTGAAGAACACCGGGGTCAACTACATTGAAGGCCTCTAA 1662 0.4609 MAIQQSLLDKPRNSISKTICLVFSVAAVICSSAFVGSYLIKSSSFLNQSPLQRLCRHALDNPSCLAHVSEVAQDPILTTTKDYNLNLFHSFLMKSTSHIQTVMNTASSIKLRINNPREEAALNDCVELMDSSINRVWDSMVTLTKETDESQQDAHTWLSSVLTNHATCLDGLEGTARTLMQDELEDLKSRAKTILAMFLAVLPQRVEPIIDEPLNGEFPSWLSSKDRKLLESSASNINANVVVAKDGSGKFKTVAQAVASAPDNGKTRYVIYVKKGTYKENVEISSKKTNVMLVGDGKDVTIITGSLNYIDGTTTFKSATVAAVGDGFIGQDIWFQNTAGPQKHQAVALRVGADRSVINRCRIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKCNIAARKPMSNQNNMVTAQGREDPNQNTGTSIQQCNIIPSSDLKPVVGSIKSFLGRPWKKYSRTVVMQSTIESHVDPTGWAEWNADSKDFLNTLYYGEYMNKGAGAGTSKRVKWPGYHIITSAAEASKFTVTQLIQGNVWLKNTGVNYIEGL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2829g00009 553 Pfam Pectinesterase 240 539 IPR000070 GO:0030599|GO:0042545
Vium2829g00009 553 CDD PMEI-like_4 63 201 - -
Vium2829g00009 553 SMART PMEI_2 46 197 IPR006501 GO:0004857
Vium2829g00009 553 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Vium2829g00009 553 FunFam Pectinesterase 234 553 - -
Vium2829g00009 553 Pfam Plant invertase/pectin methylesterase inhibitor 51 193 IPR006501 GO:0004857
Vium2829g00009 553 PANTHER PECTINESTERASE 26 543 - -
Vium2829g00009 553 NCBIfam pectinesterase inhibitor domain 27 202 IPR006501 GO:0004857
Vium2829g00009 553 Gene3D - 233 553 IPR012334 -
Vium2829g00009 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 201 IPR035513 -
Vium2829g00009 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Vium2829g00009 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 197 IPR035513 -
Vium2829g00009 553 SUPERFAMILY Pectin lyase-like 236 552 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2829g00009 Vium-Chr2829 61722 63705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2829g00009 5 553 Carbohydrate Esterase AT1G11580 56.530 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2829g00009 K01051 - gmx:100815836 944.11