Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2829g00008 ATGGCTACCCAACAATCTCTGTTAGAGAAGCCTAAAAAGCCCGTTTCCAAAACTATCTGCTTACTCCTTTCTGTAATTGCAGTTCTAAGTTCATCAGCTTTTCTTGCTTCTTATATCTTCAAACCATCCTCGGTCTTCAACGATTCCTCCCTTAACCATGTCTGTCATCACGCACTTGATACTACATCCTGCTTGGCACATATCTCAGAAGTAACCCAAACTCACATGTTCACCACAACAAAACGCCACAAATTCGATTTGCTCAAATCGTTCCTGATAAAACACGCCTCACATATTGAGAAAGCCATGGGCGAAACCAACGCTATCAGACTCAGGGTCAACAATCCGAGAGAGGAAGCAGCTTTGAAGGATTGTGTGGATCTGATGGAGTTATCCTTGGACAGAGTTTGGAACTCCATGTTAGCACTGACAAAGCAAACCACTGAGTCGCATCAAGATGCACACACGTGGCTGAGTAGCGTGCTGACTAATCATGCAACTTGCTTGGATGGATTAGAGGGTGCTGCTCGCAGTGTTATGGAGGATGAACTTGAGGACTTGAAATCTAGGTCAAGAACCGCTCTGGCGATTCTTGTTGAGACGGTTTTGCCACCGAAGGTTGAACAGATAATTGACGAACCCCTAAATGGGGACTTTCCCTCGTGGGTCAGCATCAGGGATCGGAGGCTTTTGGAGAGTGGGGTCGGGGACGTCAAGGCCAATGTCGTGGTGGCTCAGGATGGGAGTGGCAAGTTTAAGACTGTCACTGAGGCTGTGGCATCCGCACCGGACAACGGCAATACAAGGTACGTTATTTATGTGAAAAAGGGAACATATAAAGAACACGTTGAAATTGGTAAGAAGAAGAAAAACGTCATGCTCGTCGGTGACGGTATGGATGCAACTATAATCACCGGAAGCTTGAATTTCATCGACGGAACTACAACCTTTAACAGTGCCACCGTCGCTGCCGTGGGTGATGGATTTATTGGTCAAGATATATGGTTTCAGAACACAGCGGGAGCGGCAAAACACCAAGCGGTGGCTCTTCGTGTAGGCGCCGACCAATCTGTGATAAACCGTTGTCGCATAGATGCCTTTCAGGACACTCTCTACACACACTCGAACAGGCAGTTTTACAGAGACTCTGTCATCACTGGAACCATTGACTTCATTTTCGGAAATGCCGCTGTTGTGTTCCAAAAGTGTAACCTGGTGGCCCGAAAGCCCATGAGCAACCAAAAGAATATGGTGACGGCTCAAGGAAGAGAAGATCCAAACCAAAATACAGGAACTTCGATTCAACAATGTAACCTAACACCGAGTTCAGATCTTAAACCCGTCGTGGGTTCCATCAAAACTTATCTGGGTCGTCCTTGGAAGAAGTATTCGAGGACTGTTGTGATGCAGTCGTCGATAGACAGCCATATTGACCCAACAGGATGGGCAGAGTGGGATGCCCAGAGCAAAGACTTTTTGCAAACGTTGTATTACGGAGAGTACATGAACAGTGGAGCAGGTGCTGGAACCAGCAAGAGAGTGAATTGGCCCGGTTACCATATCATCAAAAGCGCAGCAGAAGCCAGCAAATTCACAGTAACACAACTCATCCAAGGAAATGTTTGGTTGAAGAACACTGGGGTCAACTTCATTGAAGGTCTCTAA 1665 0.4667 MATQQSLLEKPKKPVSKTICLLLSVIAVLSSSAFLASYIFKPSSVFNDSSLNHVCHHALDTTSCLAHISEVTQTHMFTTTKRHKFDLLKSFLIKHASHIEKAMGETNAIRLRVNNPREEAALKDCVDLMELSLDRVWNSMLALTKQTTESHQDAHTWLSSVLTNHATCLDGLEGAARSVMEDELEDLKSRSRTALAILVETVLPPKVEQIIDEPLNGDFPSWVSIRDRRLLESGVGDVKANVVVAQDGSGKFKTVTEAVASAPDNGNTRYVIYVKKGTYKEHVEIGKKKKNVMLVGDGMDATIITGSLNFIDGTTTFNSATVAAVGDGFIGQDIWFQNTAGAAKHQAVALRVGADQSVINRCRIDAFQDTLYTHSNRQFYRDSVITGTIDFIFGNAAVVFQKCNLVARKPMSNQKNMVTAQGREDPNQNTGTSIQQCNLTPSSDLKPVVGSIKTYLGRPWKKYSRTVVMQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYMNSGAGAGTSKRVNWPGYHIIKSAAEASKFTVTQLIQGNVWLKNTGVNFIEGL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2829g00008 554 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Vium2829g00008 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Vium2829g00008 554 Pfam Plant invertase/pectin methylesterase inhibitor 50 197 IPR006501 GO:0004857
Vium2829g00008 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 200 IPR035513 -
Vium2829g00008 554 FunFam Pectinesterase 235 554 - -
Vium2829g00008 554 Gene3D - 235 554 IPR012334 -
Vium2829g00008 554 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Vium2829g00008 554 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Vium2829g00008 554 NCBIfam pectinesterase inhibitor domain 28 197 IPR006501 GO:0004857
Vium2829g00008 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 197 IPR035513 -
Vium2829g00008 554 CDD PMEI-like_4 55 199 - -
Vium2829g00008 554 PANTHER PECTINESTERASE 25 544 - -
Vium2829g00008 554 SMART PMEI_2 46 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2829g00008 Vium-Chr2829 55679 57717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2829g00008 3 554 Carbohydrate Esterase AT1G11580 58.185 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2829g00008 K01051 - gmx:100815836 909.442