Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2827g00001 ATGGTATCCAAAAACCCGAACCCGCCGGAGGGATTCTACTTGGATCCGACTGTCATGGCTCTCCCAGGGATGCCTCCCTTCGCCTCCGTCTCTGCTGCTGCTGCTGCCGCCGTCTCCGCCTCCAACTCCTCGGAAGATGCAGCCAAGAAGATCCGTAAGCCCTACACAATCACCAAGTCGCGGGAGAACTGGACCGAACCAGAACACGACAAGTTCCTCGAAGCCCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACTGTTATACAGATACGTAGTCATGCACAGAAATACTTTCTCAAAGTTCAGAAGAGTGGAGCAAGTGAACATCTTCCGCCACCCAGACCTAAAAGAAAAGCAGCACATCCATATCCCCAAAAAGCTTCCAGAAATGCTCCTGTACTCCCACAAGTATCAGGATCTTTTCAATCTTCATCTTCTTTGCTTGAACCTGGATATATCCTGAAAAATGATTCCCCAGCAATGCTTAAAATTCCTATGAACACTGTGGTGTCATCCTGGTCAAACAACACCTTGCAAACTGTCAATTTATCCCCTGTGACAAAAGTGAACAATCCTTGCAGTAGTGGTGAAAGCACTCCTAAAGTGCGCCCAGCTGTTGAATCTCATGGTCAAGGACCTCATCAAGGGAATAAAATCCATCCATTGAGAGTTCTTCCAGATTTTACTCAGGTATATGGTTTCATAGGCAGTGTATTTGATCCAAATGCAACTGAACATCTGCAGAAGCTAAAAAAGATGGACCGTATAGACGTTGAGACAGTGCTACTGCTAATGAGAAACCTGTCTATCAATTTAACTAGCCCAGATTTTGAGGATCATGTAAGTATTTATGTCCCTGATATTTAG 891 0.4501 MVSKNPNPPEGFYLDPTVMALPGMPPFASVSAAAAAAVSASNSSEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLPPPRPKRKAAHPYPQKASRNAPVLPQVSGSFQSSSSLLEPGYILKNDSPAMLKIPMNTVVSSWSNNTLQTVNLSPVTKVNNPCSSGESTPKVRPAVESHGQGPHQGNKIHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHVSIYVPDI 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2827g00001 296 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Vium2827g00001 296 Gene3D - 63 111 - -
Vium2827g00001 296 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Vium2827g00001 296 MobiDBLite consensus disorder prediction 197 228 - -
Vium2827g00001 296 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Vium2827g00001 296 SMART sant 60 108 IPR001005 -
Vium2827g00001 296 CDD SANT 63 106 IPR001005 -
Vium2827g00001 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Vium2827g00001 296 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Vium2827g00001 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vium2827g00001 296 PANTHER SWI/SNF COMPLEX-RELATED 34 281 - -
Vium2827g00001 296 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vium2827g00001 296 MobiDBLite consensus disorder prediction 112 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2827g00001 Vium-Chr2827 306 7218 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium2827g00001 Myb_DNA-binding 3.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2827g00001 - - vum:124832036 566.614