Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2825g00004 ATGCACATGTTAGCGAAAGCACATAGTAAGGGGGATGGAACCAAGTCCCTGGCTAAGATACTGGCGAAATGGAAAGAATATAATGCCCAGCTTGATTCCTGTGATGATGCGGATAAACCAGTTCGCAAAGTTCCTGCCAAGGGATCAAAAAAAGGGTGTATGAAAGGTAAAGGTGGGCCTGAGAACTCGCGGTGTAATTACAGAGGTGTTAGGCAGAGGACTTGGGGAAAGTGGGTTGCTGAAATCAGAGAGCCGAACAGAGGGAATAGGCTCTGGCTAGGTACTTTTCCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCAGCGAGGGCAATGTATGGATCCTGTGCCCGTCTTAACTTTCCCAATGTTTCTGTTTCCAGTTTCTCTGAGGAATCCTCCAAAGATTCTCCATTGGCGAATCATTCTGGTTCCTCAAAGGCAGTGTCTGCAAATGAATCCATGGTTTCACTTAGTAACTCTAAGGGGGGAGGAGCAGAAGAGGATGTCGATATGGAGCCCATTTCCTTATCCTTAAGTGTAAAACACGAGAACGGTGAAGGATAG 570 0.4702 MHMLAKAHSKGDGTKSLAKILAKWKEYNAQLDSCDDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESSKDSPLANHSGSSKAVSANESMVSLSNSKGGGAEEDVDMEPISLSLSVKHENGEG 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2825g00004 189 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Vium2825g00004 189 MobiDBLite consensus disorder prediction 42 65 - -
Vium2825g00004 189 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Vium2825g00004 189 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Vium2825g00004 189 MobiDBLite consensus disorder prediction 129 162 - -
Vium2825g00004 189 MobiDBLite consensus disorder prediction 129 189 - -
Vium2825g00004 189 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Vium2825g00004 189 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Vium2825g00004 189 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Vium2825g00004 189 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 157 - -
Vium2825g00004 189 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Vium2825g00004 189 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Vium2825g00004 189 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2825g00004 Vium-Chr2825 23138 25347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2825g00004 10 127 AP2-EREBP Transcription Factor Family AT2G40350 63.934 7.24e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2825g00004 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2825g00004 - - gmx:100527471 332.798