Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2825g00003 ATGCACATGTTAGCGAAAGCACATAGTAAGGGGGATGGAACCAAGTCCCTGGCTAAGATACTGGCGAAATGGAAAGAATATAATGCCCAGCTTGATTCCTGTGATGATGCGGATAAACCAGTTCGCAAAGTTCCTGCCAAGGGATCAAAAAAAGGGTGTATGAAAGGTAAAGGTGGGCCTGAGAACTCGCGGTGTAATTACAGAGGTGTTAGGCAGAGGACTTGGGGAAAGTGGGTTGCTGAAATCAGAGAGCCGAACAGAGGGAATAGGCTCTGGCTAGGTACTTTTCCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCAGCGAGGGCAATGTATGGATCCTGTGCCCGTCTTAACTTTCCCAATGTTTCTGTTTCCAGTTTCTCTGAGGAATCCTCCAAAGATTCTCCATTGGCGAATCATTCTGGTTCCTCAAAGGCAGTGTCTGCAAATGAATCCATGGTTTCACTTAGTAACTCTAAGGGGGGAGGAGCAGAAGAGGATGTCGATATGGAGCCCATTTCCTTATCCTTAAGTGTAAAACACGAGAACGGTGAAGGTGAATCAGGGATAAGTTCATCTCCTCCTTCTTCTTCATAG 606 0.467 MHMLAKAHSKGDGTKSLAKILAKWKEYNAQLDSCDDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESSKDSPLANHSGSSKAVSANESMVSLSNSKGGGAEEDVDMEPISLSLSVKHENGEGESGISSSPPSSS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2825g00003 201 MobiDBLite consensus disorder prediction 42 65 - -
Vium2825g00003 201 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Vium2825g00003 201 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Vium2825g00003 201 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 174 - -
Vium2825g00003 201 MobiDBLite consensus disorder prediction 129 162 - -
Vium2825g00003 201 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Vium2825g00003 201 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Vium2825g00003 201 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Vium2825g00003 201 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Vium2825g00003 201 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Vium2825g00003 201 MobiDBLite consensus disorder prediction 129 201 - -
Vium2825g00003 201 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Vium2825g00003 201 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2825g00003 Vium-Chr2825 23137 24857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2825g00003 10 127 AP2-EREBP Transcription Factor Family AT2G40350 63.934 1.27e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2825g00003 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2825g00003 - - gmx:100527471 326.25