Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2824g00039 ATGGACCCAACTTCCGACACTCCGCCTCCGCCTACGGCCGTCCCCTTCACGGCGGAACTCAACAACCACGTCCCCACCACGACTGAGGTTAACTCCATTCCCAACCACCCGCCTTATGACGAGATGATATACACAGCTATTGGAGCTCTCAAAGAGAAAAATGGGTCGAGCAAGCGTGCCATAGGAAAGTACATCCAGCAAGTGTACAAGAACCTTCCTACCACTCACTCTGCTCTTCTCACTCATCACCTCAACCGTTTGAGATCAGTTAACCTTCTTGTCATGGTCAAAAAATCCTATAAGCTCCCTGGATCTGATAATACTCCACCGTCTCCTCCCTCTCAAGTTCAAAAGACCCGTGGCAGGCCTCCCAAACTGAAACCCCAGCCCACTGCCGACCCTGTCTGGGCTTCTCTTGGCCTGTCTGACGACCCTACTCCTGCTTCTGCTCCTCAATCCGAGAAAAGAGGTCCGGGTCGTCCCAGAAAGATTTTAGGCGTGAGCCCGGGCTCCGCAACTTCGCCTGCTCGAAGGGGCCGCCCACCGGGCTCTTCTGGGAAATCTAAGGTGTCAAGGAGGGTCGGGCGTCCTCCCAAGCCCAAATCGGTCTCTGGGATCTCCAGCGGGCTCAAACGACGGGGCCGCCCGCCTAAAGCCAAATCAAACATCTCCGTAATTCCCTTTGCAGCTCCTGTTGCTCCTGGTCAGCCCACTGTACATCCCATCATTCCAGCCCCTTCTGTGCCCAATGGGTTCCCCAGGCCCAGAGGACGTCCCAGAAAGATTGTTCCTGCCGGTGGTGCTACACTGCTCACTCTCACCGCTGACGGTGGTGCAGGTGCAGCCCGAGGCCGCGGACGGCCACGCGGAGTCTTTTCTGTGGTTAGGGCCGGTAGGCTCCAGAAGCTCGCAGTTGGAAGGGGTCAGAATCCTGCAAGAAGGCCGGTGGGCCGCCCTAAAGGATCAACTGCTGCTGCAATCAGTGCACATAAGACTGCTAATGAAGATCTAAGGAAGAAGCTTGAACACTTTCAAACCAAAGTGAAGGAATCTCTTGGCATGCTTAAACCGTACTTCAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATTCAAGAGCTGGAAGTGCTGTCAACTTTGGATCTTAAGGCAGCATTGAGGGATGAGACTCAGCAACAGCCAGAGCCACTGCCACTGCCGCAGACACAGGTTTATGAACAGCAATATCCCCCACAGGTGCCGCAACAGCCACAGCTGCAGGAATTTTTTCAAACACATGCATCAGCTCAAAGCGAGGCTTGA 1302 0.5453 MDPTSDTPPPPTAVPFTAELNNHVPTTTEVNSIPNHPPYDEMIYTAIGALKEKNGSSKRAIGKYIQQVYKNLPTTHSALLTHHLNRLRSVNLLVMVKKSYKLPGSDNTPPSPPSQVQKTRGRPPKLKPQPTADPVWASLGLSDDPTPASAPQSEKRGPGRPRKILGVSPGSATSPARRGRPPGSSGKSKVSRRVGRPPKPKSVSGISSGLKRRGRPPKAKSNISVIPFAAPVAPGQPTVHPIIPAPSVPNGFPRPRGRPRKIVPAGGATLLTLTADGGAGAARGRGRPRGVFSVVRAGRLQKLAVGRGQNPARRPVGRPKGSTAAAISAHKTANEDLRKKLEHFQTKVKESLGMLKPYFNHESPVTAIAAIQELEVLSTLDLKAALRDETQQQPEPLPLPQTQVYEQQYPPQVPQQPQLQEFFQTHASAQSEA 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2824g00039 433 FunFam Histone H1.2 32 112 - -
Vium2824g00039 433 SUPERFAMILY "Winged helix" DNA-binding domain 34 111 IPR036390 -
Vium2824g00039 433 Coils Coil 327 347 - -
Vium2824g00039 433 PRINTS AT-hook-like domain signature 208 219 IPR017956 GO:0003677
Vium2824g00039 433 PRINTS AT-hook-like domain signature 251 261 IPR017956 GO:0003677
Vium2824g00039 433 PRINTS AT-hook-like domain signature 117 127 IPR017956 GO:0003677
Vium2824g00039 433 SMART AT_hook_2 210 222 IPR017956 GO:0003677
Vium2824g00039 433 SMART AT_hook_2 313 325 IPR017956 GO:0003677
Vium2824g00039 433 SMART AT_hook_2 191 203 IPR017956 GO:0003677
Vium2824g00039 433 SMART AT_hook_2 282 294 IPR017956 GO:0003677
Vium2824g00039 433 SMART AT_hook_2 155 167 IPR017956 GO:0003677
Vium2824g00039 433 SMART AT_hook_2 253 265 IPR017956 GO:0003677
Vium2824g00039 433 SMART AT_hook_2 117 129 IPR017956 GO:0003677
Vium2824g00039 433 SMART AT_hook_2 175 187 IPR017956 GO:0003677
Vium2824g00039 433 Gene3D - 32 113 IPR036388 -
Vium2824g00039 433 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 35 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium2824g00039 433 SMART h15plus2 33 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium2824g00039 433 MobiDBLite consensus disorder prediction 101 222 - -
Vium2824g00039 433 MobiDBLite consensus disorder prediction 411 433 - -
Vium2824g00039 433 CDD H15 34 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium2824g00039 433 Pfam linker histone H1 and H5 family 36 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium2824g00039 433 PANTHER HISTONE H1 14 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2824g00039 Vium-Chr2824 265622 268721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2824g00039 40 105 Single Myb Histone (SMH) Gene Family AT1G49950 40.909 7.40e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2824g00039 - - gmx:547676 526.168