Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2824g00026 ATGGATATTGAGGAGGATATCCGTTCTTTACAGCTTGAATCAGCAGAAGACAATAACGGGGTGGTAAATCCAGAGGATGGAAGGCCGGAAGAGGTTGAGAAATCTGATAAGATGGATGAAGATCCTAAGCAAGAGGTTGAAGCACAGGATGTTGAGCCTGAGCCAAAAGTGAAAGATAAGGAGATTCATCCTGTTCAAGAAGAAGAAGAGGAGCCAGAGACAACTAAAAGGCATTTGAATGTGGTGTTTATTGGCCATGTGGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAAGTTGATGAACGAACTATTCAAAAATACGAGAAAGAGGCCAAGGACAAAAGTCGAGAAAGTTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAAACTGAGACAACAAGGTTTACTATTTTGGACGCACCTGGCCACAAAAGCTATGTTCCTAATATGATTAGTGGTGCATCTCAAGCTGATATTGGAGTTTTGGTTATATCTGCCCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAGCATGTCCAGCTTGCTAAAACGCTGGGTGTGGCTAAGCTGCTTGTTGTTGTTAATAAAATGGACGAACCTACAGTGCAGTGGTCAAAAGAAAGGTATGATGAAATGAGTTCAAAGATGGTTCCATTCTTAAAGCAATCTGGGTACAATGTCAAGAAAGATGTCTTGTTTTTGCCAATATCTGGTCTAGCGGGTACAAACATGAAAACAAGGGTGGACAAAAGTGTTTGCCCATGGTGGAATGGGCCTTGCTTGTTTGAGGCCCTTGATGCTATCGAAGTTCCACCGCGAGATCCCAAAGGTCCTTTCAGGATGCCCATTATTGACAAATTTAAGGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTTCTGTTCGTGAGGGAGATTCTTTGTTGGTCATGCCAAATAAGGATCAAGTGAAAGTTGTTGCCATATTCATTGATGAGGACCGTGTTAAACGTGCTGGACCTGGTTGGAAAATTTTACTGATTAGTCTTGATATGGTTGTTGACGAAGAAAGAGACATAGTAACCGGATTTTAGTCTAGTCTTAGTGCAGTTGCTAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCATATCCACTCTGTGGTTGAGGAGTGTGAGATTGTTGAACTTTTACAGCAAATTGATACAAAGACAAGGAAGCCTTTGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCTGTTGTTGTGTGCCGTGTTCAGGTTAGTAACTCTATTTGCATTGAGAAGTTCTCTGATTTCCCACAACTTGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCCGTGGGAAAAGTGACTGGTCTGTGA 1524 0.4232 MDIEEDIRSLQLESAEDNNGVVNPEDGRPEEVEKSDKMDEDPKQEVEAQDVEPEPKVKDKEIHPVQEEEEEPETTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSKERYDEMSSKMVPFLKQSGYNVKKDVLFLPISGLAGTNMKTRVDKSVCPWWNGPCLFEALDAIEVPPRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGWKILLISLDMVVDEERDIVTGFXSSLSAVANPIPAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTRKPLKKKVLFVKNGAVVVCRVQVSNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2824g00026 507 PRINTS GTP-binding elongation factor signature 219 228 IPR000795 GO:0003924|GO:0005525
Vium2824g00026 507 PRINTS GTP-binding elongation factor signature 159 169 IPR000795 GO:0003924|GO:0005525
Vium2824g00026 507 PRINTS GTP-binding elongation factor signature 80 93 IPR000795 GO:0003924|GO:0005525
Vium2824g00026 507 PRINTS GTP-binding elongation factor signature 175 186 IPR000795 GO:0003924|GO:0005525
Vium2824g00026 507 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 401 506 IPR009001 -
Vium2824g00026 507 Gene3D - 57 300 IPR027417 -
Vium2824g00026 507 CDD EF1_alpha 80 301 - -
Vium2824g00026 507 Pfam Elongation factor Tu C-terminal domain 398 506 IPR004160 -
Vium2824g00026 507 Gene3D Translation factors 305 390 - -
Vium2824g00026 507 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Vium2824g00026 507 MobiDBLite consensus disorder prediction 23 77 - -
Vium2824g00026 507 Pfam Elongation factor Tu GTP binding domain 76 289 IPR000795 GO:0003924|GO:0005525
Vium2824g00026 507 Gene3D Translation factors 400 507 - -
Vium2824g00026 507 PANTHER TRANSLATION FACTOR 69 505 - -
Vium2824g00026 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 311 IPR027417 -
Vium2824g00026 507 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 56 300 - -
Vium2824g00026 507 FunFam Putative translation elongation/initiation factor family protein 399 507 - -
Vium2824g00026 507 MobiDBLite consensus disorder prediction 1 77 - -
Vium2824g00026 507 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 76 302 IPR000795 GO:0003924|GO:0005525
Vium2824g00026 507 SUPERFAMILY Translation proteins 299 374 IPR009000 -
Vium2824g00026 507 CDD eRF3_C_III 399 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2824g00026 Vium-Chr2824 170016 180698 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2824g00026 76 502 Eukaryotic Initiation Factors Gene Family AT5G60390 37.063 6.53e-93 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2824g00026 K03267 - gmx:100793653 907.516