Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2824g00023 ATGGCAGCCCCGGATCCGTCCAAAAAAGTGGCTGATAGATATCTGAAGCGTGAAGTTCTTGGTGAAGGTACCTATGGAGTTGTGTACAAAGCCATTGACACCCACACAGGACAGACAGTTGCAATTAAGAAAATTCGACTTGGCAAGCAGAAAGAAGGGGTAAATTTTACAGCTCTTAGAGAAATAAAGCTTCTTAAAGAGCTTAAGGATCCTAATATTGTTGAATTGATAGATGCATTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACGGACCTTGAAGCTGTCATACGAGATCGAAATATTTTTCTTTCACCGGCTGATACAAAATCTTACCTTCAAATGACGATAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCTAATGGACAGCTAAAACTTGCAGATTTTGGTTTAGCACGAATGTTTGGAAGCCCAGATAGAAGGTTCACTCATCAGGTTTTTGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGCTCTGGGGTTGATGTTTGGGCTTCAGCTTGTATATTTGCTGAACTTCTTCTCCGTCGACCCTTTTTGCAGGGTACAAGTGACATTGATCAATTAGGAAAGATCTTTTCGGCATTTGGCACTCCAACAGCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTACGTCGAATACCAATATGTTCCTGCACCCCCTCTGCGTTCTTTGTTTCCGATGGCTACTGATGATGCTTTAGATTTGTTATCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCAGATCCAGACAAGCTCCCTAGACCTGCTCCTAAGAGGGAATCTAAGGCTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGAACGGGATGGGTTTGAAGGAAATTCCCAACAAGCAGATAAGGTTGATGGCGGTTTTGGTGATTTCAGACAGACAACTGATGATAATTCAGTGCTGATAGAACACATTTAA 1131 0.4191 MAAPDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTIKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWASACIFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLPDYVEYQYVPAPPLRSLFPMATDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPSDPDKLPRPAPKRESKASDFNLQEGPTVLSPPRKSRRVMPERDGFEGNSQQADKVDGGFGDFRQTTDDNSVLIEHI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2824g00023 376 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2824g00023 376 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2824g00023 376 MobiDBLite consensus disorder prediction 335 349 - -
Vium2824g00023 376 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Vium2824g00023 376 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Vium2824g00023 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vium2824g00023 376 MobiDBLite consensus disorder prediction 295 376 - -
Vium2824g00023 376 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Vium2824g00023 376 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Vium2824g00023 376 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Vium2824g00023 376 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Vium2824g00023 376 FunFam Cyclin-dependent kinase D-1 5 94 - -
Vium2824g00023 376 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2824g00023 376 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2824g00023 Vium-Chr2824 156236 160390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2824g00023 4 354 Core Cell Cycle Gene Families AT1G18040 78.917 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Vium2824g00023 Pkinase 3.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2824g00023 K02202 - gmx:100776618 709.909