LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2824g00021	ATGGCAGCCCCGGATCCGTCCAAAAAAGTGGCTGATAGATATCTGAAGCGTGAAGTTCTTGGTGAAGGTACCTATGGAGTTGTGTACAAAGCCATTGACACCCACACAGGACAGACAGTTGCAATTAAGAAAATTCGACTTGGCAAGCAGAAAGAAGGGGTAAATTTTACAGCTCTTAGAGAAATAAAGCTTCTTAAAGAGCTTAAGGATCCTAATATTGTTGAATTGATAGATGCATTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACGGACCTTGAAGCTGTCATACGAGATCGAAATATTTTTCTTTCACCGGCTGATACAAAATCTTACCTTCAAATGACGATAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCTAATGGACAGCTAAAACTTGCAGATTTTGGTTTAGCACGAATGTTTGGAAGCCCAGATAGAAGGTTCACTCATCAGGTTTTTGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGCTCTGGGGTTGATGTTTGGGCTTCAGCTTGTATATTTGCTGAACTTCTTCTCCGTCGACCCTTTTTGCAGGGTACAAGTGACATTGATCAATTAGGAAAGATCTTTTCGGCATTTGGCACTCCAACAGCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTACGTCGAATACCAATATGTTCCTGCACCCCCTCTGCGTTCTTTGTTTCCGATGGCTACTGATGATGCTTTAGATTTGTTATCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCAGATCCAGACAAGCTCCCTAGACCTGCTCCTAAGAGGGAATCTAAGGCTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGAACGGGATGGGTTTGAAGGAAATTCCCAACAAGCAGATAAGGTTGATGGCGGTTTTGGTGATTTCAGACAGACAACTGATGATAATTCAGGCAAGAATGAATCAGCTCCAATGTCTGTAGATTTTTCTATCTTTGGATTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGATAGAACACATTTAAAAAGAAAATTAGATCTAGAATTTCAACAGCCAGAATGA	1248	0.4103	MAAPDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTIKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWASACIFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLPDYVEYQYVPAPPLRSLFPMATDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPSDPDKLPRPAPKRESKASDFNLQEGPTVLSPPRKSRRVMPERDGFEGNSQQADKVDGGFGDFRQTTDDNSGKNESAPMSVDFSIFGLKPPNRPTINSADRTHLKRKLDLEFQQPE	415

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2824g00021	415	MobiDBLite	consensus disorder prediction	363	377	-	-
	Vium2824g00021	415	ProSiteProfiles	Protein kinase domain profile.	14	294	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2824g00021	415	SUPERFAMILY	Protein kinase-like (PK-like)	10	301	IPR011009	-
	Vium2824g00021	415	MobiDBLite	consensus disorder prediction	295	415	-	-
	Vium2824g00021	415	MobiDBLite	consensus disorder prediction	335	349	-	-
	Vium2824g00021	415	MobiDBLite	consensus disorder prediction	398	415	-	-
	Vium2824g00021	415	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	132	144	IPR008271	GO:0004672\|GO:0006468
	Vium2824g00021	415	CDD	STKc_CDK7	13	307	IPR037770	GO:0005675\|GO:0008353\|GO:0070985
	Vium2824g00021	415	ProSitePatterns	Protein kinases ATP-binding region signature.	20	44	IPR017441	GO:0005524
	Vium2824g00021	415	Gene3D	Transferase(Phosphotransferase) domain 1	95	310	-	-
	Vium2824g00021	415	SMART	serkin_6	14	294	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2824g00021	415	FunFam	Putative cyclin-dependent kinase 7	95	310	-	-
	Vium2824g00021	415	PANTHER	CELL DIVISION PROTEIN KINASE	12	300	-	-
	Vium2824g00021	415	Pfam	Protein kinase domain	16	294	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2824g00021	415	Gene3D	Phosphorylase Kinase; domain 1	5	94	-	-
	Vium2824g00021	415	FunFam	Cyclin-dependent kinase D-1	5	94	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2824g00021	Vium-Chr2824	151445	155571	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2824g00021	4	412	Core Cell Cycle Gene Families	AT1G18040	74.817	0.0	627

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CDK7	Vium2824g00021		Pkinase	4.7e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2824g00021	K02202		-	gmx:100776618	795.423