Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2824g00001 ATGCCCACAATTGCAGCAAGACAAAGCAGAGCCCACCTAACAACCCAAGAAGAAAAGGGCACCCCACAAATTAAAATTCATTATTTCAAACCAATAAATAATAATCATTCAAAACACATTCCTCTCACAAGCCCCTTCAAGTTTCATTCTATTCCTTCTCTCTCTCTCTCTCTCTCAACCATGCCTGTTGTCACAAACAGAACAACACCTACAGTGGCAGAGCACATCAAATGGAGAAGACCCAGAAACCAATTCAACCATCAACACCACCACCCCATTCCAGAATCAGATCCAAACCCTCAAATCCCTTCCATAATCCAATCAACTAGGGGCAAGTCCACCATATCCTCCCTGCTCCTCTCCACTTTCTCCAACAATACCCCCTCCTCCAATAATGACAGCCCCACCATCAATGCCACTGCCCAAAGCAAGAAAAAAACCAACTTTTCCGCAGCAACGTTCAGAGGGCTGGGGTGCACCGCCGGCGCGTCACAGCAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGGAAGAAAACAAGAAAGAAGAAGCACAAGAGGACCACCAACGGCGGCAAGAACAAGACTTTCCATGGCGGGATTCTGGAGGGTTCCAATCCTGGGTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGCATTGGGTTCTCAGCAGATGCTGCTGCCTCTGTTGATTGTGTTGTGGCCCGGAAGAATGTATCTGCCAGAGGGAAAATTGATGTGGATAAGATTACTCACAGGGAGCGATCATCGTATGTGGGAAGGCGCACAGAAACCTTCACTTTTCTGGACACTGATTCTGACATTTTCACGCCACGCTCTGCCTCTGACTCTTATGGAACTGCAACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACACGATCAATATAGAGACTGGAGACTTGATGTTGATAACATGTCCTATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTTAAGGAAGATGAGATGGGACGGAACATAAGGAAAGCCAGGCTTCAATTTTGGGATGATACATCAAAGCATCAAATAGATAAAGAGTGCAGCATTTGTCAGGAGGAGTATGAAGCAGGTGATGAGCTGGGGAGGCTAAATTGTGAACACAGTTATCACTTTCAGTGTATAAAACAATGGGTTTCACAGAAAAACTTCTGCCCAGTATGTAAGCAGCAAGTTGCAGCACGACATTGA 1308 0.4633 MPTIAARQSRAHLTTQEEKGTPQIKIHYFKPINNNHSKHIPLTSPFKFHSIPSLSLSLSTMPVVTNRTTPTVAEHIKWRRPRNQFNHQHHHPIPESDPNPQIPSIIQSTRGKSTISSLLLSTFSNNTPSSNNDSPTINATAQSKKKTNFSAATFRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRTTNGGKNKTFHGGILEGSNPGCVDFQDVWCGPGIGFSADAAASVDCVVARKNVSARGKIDVDKITHRERSSYVGRRTETFTFLDTDSDIFTPRSASDSYGTATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDQYRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKARLQFWDDTSKHQIDKECSICQEEYEAGDELGRLNCEHSYHFQCIKQWVSQKNFCPVCKQQVAARH 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2824g00001 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 433 IPR013083 -
Vium2824g00001 435 ProSiteProfiles Zinc finger RING-type profile. 387 428 IPR001841 -
Vium2824g00001 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 67 431 IPR045191 GO:0061630
Vium2824g00001 435 MobiDBLite consensus disorder prediction 177 204 - -
Vium2824g00001 435 MobiDBLite consensus disorder prediction 124 144 - -
Vium2824g00001 435 Pfam Ring finger domain 385 428 IPR001841 -
Vium2824g00001 435 SUPERFAMILY RING/U-box 386 432 - -
Vium2824g00001 435 SMART ring_2 387 427 IPR001841 -
Vium2824g00001 435 FunFam E3 ubiquitin-protein ligase rnf12-A 354 433 - -
Vium2824g00001 435 MobiDBLite consensus disorder prediction 86 106 - -
Vium2824g00001 435 MobiDBLite consensus disorder prediction 181 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2824g00001 Vium-Chr2824 3888 7648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2824g00001 72 342 C3H Transcription Factor Family AT1G73760 41.438 8.52e-55 182