Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2822g00003 ATGGCAGATCCTGCTAGTCATGGGAGTCTTGAACGTGATATTGAGCAAACACTCACTGCTTTGAAGAAAGGAACTCAATTGATAAAGTACAGTCGAAAAACGAAGCCAAAAGTTCGTTCATTCAAACTTTCTCTGGATGAGAAAACGTTGATTTGGATTTCTCATAAGAAGGAAAGGCATTTGAAATTATCTTCAGTTTCACATATTATCTCTGGACAAAGAACTGCTGTTTTTAGAAGATATTTGCAACCAGAAAAGAATCATCTTTCATTTTCACTTGTTTATAATAATGGGGAGCGAACACTTGATTTGATATGCAAGGACAAAGATGAGACAGAGACATGGTTTAGAGGCCTTAATACATTAATTTCATCGGAAAAGTTAAATAGGAGCCTTGGAAGTGGATTTTCTTATGATGGTGTTAATGTTATCCCAAATGGTAATCGTTTTGCTGCAACACTACAATATGCTATAAGCTTTGCTGGTAACAAGGTCCCTTTTGGTTTTGATAGTCATGAGTCTTCATTGAATTTGGCAAGTACAGATGTGGGGTTAGAGCGTGCTAATATGCAACCAAGAACAAGTATTGGAGATGGTTTTCGTATCAGTGTGTCAAGTACACCTAGTGTTTCAAGTTCAGGATCAGGACCAGATGACATAGAATCACTTGGTGATGTTTATGTATGGGGAGAGGTTTGGGCAGATGGGATTTCACATGATGTTTTCGTTACTCAACCCCCTGCTACAACAGATGTCTTGATTCCCAAACCATTGGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCTGGAATGCGACACATTGCTTTAGTAACACGACAAGGAGAGGTTTTTACATGGGGAGAAGAATCTGGGGGCAGACTTGGTCATGGAATTGATAAAGATTTTAGTCGTCCTCATCTTGTTGAGTTTTTGGCAGTTACCAACATGGATTTTGTTGCTTGTGGAGAGAATCATACATGCGCCGTGTCTACTTCTGATGATCTTTTCTCATGGGGTGATGGTACATATAATGTTGGACTTCTTGGACATGGAACTGATGTCAGCCATTGGATACCAAAGAAGGTTAGTGGTCCTCTAGAAGGGCTTCAAGTTATATCTATATCATGTGGCACATGGCATTCTGCATTAGCAACTTCTAACGGGAAACTCTTTACCTTTGGTGATGGAACATTTGGTGTATTGGGTCATGGAAATAGACAAAGTGTATCATATCCAAAAGAGGTGCAATTGTTAAGTGGATTGAAAACTATTAAGGTTTCATGTGGAGTATGGCATACTGCAGCCATTGTAGAGGTTACTTTTCAATCTGGTTCAAATGTTTTATCCAGAAAGCTTTTCACTTGGGGAGATGGTGACAAATATCGTTTGGGACATGGAAATAAGGAAACATACCTTCAACCAACTTGTGTCTCTACACTTATTGAATACAACTTCCATCAAATAGCTTGTGGGCACACAATGACTGTTGCCCTCACTACATCTGGTCATGTCTTCACCATGGGAAACACTGAAAATGGTCAATTGGGAAATCCTTTAGCTGATGGAAAAGTACCTATCCTAGTACAAGATAAGTTAGTGGGTGAATTTGTTGAGGAAATATCATGTGGGTCACATCATGTTGCAGCCTTAACATCAAGAAGTGAACTATATACATGGGGTAAAGGTGCTAATGGAAGATTGGGACATGGAGACATAGAAGATAGAAAGTCTCCAACATTAGTGGAATCCTTGAAAGATAGACATGTGAAGAATATTTCATGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTGTCTGGAGTTGACCAATCTATTTGCACTGGTTGTAGACAACCATTTGGTTTCACTAGAAAGAGACATAATTGTTATAATTGTGGATTAGTGCATTGTCATGGTTGCAGTTCAAGAAAAGTACTAAAAGCAGCCTTGGCTCCAACACCAGGAAAACCACATCGTGTGTGTGACTCTTGTTATAATAAACTCAAAGCTGTTGAGGCATGTGCTAGTGCAAATCTCAATAGAAAAATTACTGCTACTACTTCTGCACCTCGCTCTTCCATGGATTCAAGGGAAAGATTTGGCACTGGAGAAATTAAGTCTTCAAGACTCATTTTGCCTCCAATCACAGAACCAGTAAAATATCATCAAATATTGACTAATAAGCTGGGAAGCAGTTATCCTTCCATGTCTGCATCTTCCCAAATTCCAACACTTCTACAATTGAATGAGATTACATTTTCAAATTCAATGAATTCCTCTCAAAACGTTATGAAGTCTGCTTTATCTCCTAATCCACCACCAATTTCACCTGCAAGACCATCGTCTCCTCATACAAGAAGGTCAAGCTCACCACGTTCTCGAACAGGATTTTCTAGAAGTCTCATTGAAAGTTTGAACAAGTCAAATGAACTTCTAAATCAACAAGTTTCAACGCTGCAAAACCAGTTACGAACTTTGAAGCAAAAACAAGTAATGGAAATTGCAAAGCTTCAGAAAAATGTTAGGGAAGCTACTTCCTTAGCTCTAGACGAATCTTCAAAACATAAAACTACGAAAGAGTTTTTTAACTCTACCGTAGATCAGTTGAAGGAAATGGTGGAGAAGTTGCCACCAGAAACTTTAGAAAGTGAAAATTGGAAAACCATACTTACTGGAGCTGAAGATTTTCTGAGAGTTAGTTCAGAATCTGAAATGCCCTCCATATCCCCAAGTAACAATTCTCAACAACAAAATGTTCCTAATAAACTTGACTCAAATGATAGTTCTTCTAAATTGCAAGACGAAAATAGTGAAACTGAAGGAGTTGAATCATCATCACGAGATGAAGGAAATGTTCTTCAAGAAAGTAACAACTCATATTTATCAAATAATGAAGCATCCATGTCTTTACAAAACTCTCTAAGAGAACCTTCAAGATCAATGAGAGAAGGAGAAACACAAGTCATTGAACAGTTTGAACCTGGTGTATATGTAACATTAATAGTAAAGCCTAATGGTATCAAGGCTTTCAAACGAGTTAGATTCAGTAAACGAAGGTTCCATGAACATCAAGCAGAAGAATGGTGGAATAAAAACAAAGATAGGGTGCTTAGGAAATATAGTACTTTAGCAGCTACAAAAGCTGATGGTTCTGCGTCATCTAACACGCTACCACCACCACCTGCAGAAGAAAATATTGAGGCAATGTCTTCCTAA 3231 0.3819 MADPASHGSLERDIEQTLTALKKGTQLIKYSRKTKPKVRSFKLSLDEKTLIWISHKKERHLKLSSVSHIISGQRTAVFRRYLQPEKNHLSFSLVYNNGERTLDLICKDKDETETWFRGLNTLISSEKLNRSLGSGFSYDGVNVIPNGNRFAATLQYAISFAGNKVPFGFDSHESSLNLASTDVGLERANMQPRTSIGDGFRISVSSTPSVSSSGSGPDDIESLGDVYVWGEVWADGISHDVFVTQPPATTDVLIPKPLESSVVLDVQQIASGMRHIALVTRQGEVFTWGEESGGRLGHGIDKDFSRPHLVEFLAVTNMDFVACGENHTCAVSTSDDLFSWGDGTYNVGLLGHGTDVSHWIPKKVSGPLEGLQVISISCGTWHSALATSNGKLFTFGDGTFGVLGHGNRQSVSYPKEVQLLSGLKTIKVSCGVWHTAAIVEVTFQSGSNVLSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTVALTTSGHVFTMGNTENGQLGNPLADGKVPILVQDKLVGEFVEEISCGSHHVAALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVESLKDRHVKNISCGSNFTSCICIHKWVSGVDQSICTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEACASANLNRKITATTSAPRSSMDSRERFGTGEIKSSRLILPPITEPVKYHQILTNKLGSSYPSMSASSQIPTLLQLNEITFSNSMNSSQNVMKSALSPNPPPISPARPSSPHTRRSSSPRSRTGFSRSLIESLNKSNELLNQQVSTLQNQLRTLKQKQVMEIAKLQKNVREATSLALDESSKHKTTKEFFNSTVDQLKEMVEKLPPETLESENWKTILTGAEDFLRVSSESEMPSISPSNNSQQQNVPNKLDSNDSSSKLQDENSETEGVESSSRDEGNVLQESNNSYLSNNEASMSLQNSLREPSRSMREGETQVIEQFEPGVYVTLIVKPNGIKAFKRVRFSKRRFHEHQAEEWWNKNKDRVLRKYSTLAATKADGSASSNTLPPPPAEENIEAMSS 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2822g00003 1076 SUPERFAMILY RCC1/BLIP-II 223 609 IPR009091 -
Vium2822g00003 1076 SUPERFAMILY PH domain-like 13 123 - -
Vium2822g00003 1076 Gene3D - 12 130 IPR011993 -
Vium2822g00003 1076 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Vium2822g00003 1076 PRINTS Chromosome condensation regulator RCC1 signature 493 511 IPR000408 -
Vium2822g00003 1076 PRINTS Chromosome condensation regulator RCC1 signature 392 406 IPR000408 -
Vium2822g00003 1076 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Vium2822g00003 1076 PRINTS Chromosome condensation regulator RCC1 signature 265 278 IPR000408 -
Vium2822g00003 1076 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Vium2822g00003 1076 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 612 674 IPR017455 -
Vium2822g00003 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 454 500 IPR000408 -
Vium2822g00003 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 557 604 IPR000408 -
Vium2822g00003 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 283 331 IPR000408 -
Vium2822g00003 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 389 438 IPR000408 -
Vium2822g00003 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 336 385 IPR000408 -
Vium2822g00003 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Vium2822g00003 1076 MobiDBLite consensus disorder prediction 1052 1076 - -
Vium2822g00003 1076 Pfam FYVE zinc finger 608 674 IPR000306 GO:0046872
Vium2822g00003 1076 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Vium2822g00003 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 452 503 IPR000408 -
Vium2822g00003 1076 Pfam Transcription factor regulating root and shoot growth via Pin3 991 1045 IPR013591 -
Vium2822g00003 1076 MobiDBLite consensus disorder prediction 933 950 - -
Vium2822g00003 1076 FunFam PH, RCC1 and FYVE domains-containing protein 1 195 443 - -
Vium2822g00003 1076 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 269 279 IPR000408 -
Vium2822g00003 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Vium2822g00003 1076 ProSiteProfiles PH domain profile. 91 124 IPR001849 -
Vium2822g00003 1076 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 868 - -
Vium2822g00003 1076 ProSiteProfiles BRX domain profile. 991 1046 IPR013591 -
Vium2822g00003 1076 SMART fyve_4 606 675 IPR000306 GO:0046872
Vium2822g00003 1076 MobiDBLite consensus disorder prediction 786 803 - -
Vium2822g00003 1076 MobiDBLite consensus disorder prediction 906 987 - -
Vium2822g00003 1076 MobiDBLite consensus disorder prediction 907 932 - -
Vium2822g00003 1076 CDD PH_PLC_plant-like 12 124 - -
Vium2822g00003 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 334 IPR000408 -
Vium2822g00003 1076 Coils Coil 807 834 - -
Vium2822g00003 1076 Gene3D - 449 619 IPR009091 -
Vium2822g00003 1076 Gene3D - 203 448 IPR009091 -
Vium2822g00003 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 389 IPR000408 -
Vium2822g00003 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 441 IPR000408 -
Vium2822g00003 1076 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Vium2822g00003 1076 Pfam Transcription factor BRX N-terminal domain 855 890 IPR027988 -
Vium2822g00003 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Vium2822g00003 1076 MobiDBLite consensus disorder prediction 767 803 - -
Vium2822g00003 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 620 680 IPR013083 -
Vium2822g00003 1076 MobiDBLite consensus disorder prediction 951 982 - -
Vium2822g00003 1076 CDD FYVE_like_SF 618 670 - -
Vium2822g00003 1076 SUPERFAMILY FYVE/PHD zinc finger 608 678 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2822g00003 Vium-Chr2822 71940 78542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2822g00003 988 1045 Major Intrinsic Protein MIP AT1G31880 41.379 1.44e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2822g00003 - - gmx:100779684 1647.48