Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2815g00011 ATGGACAAGGTTTCTGTTCTTAACAAGGCCATAGAATACGTGAGGTCTCTTGAGCAGCGTGTGAAAGATTTGGAGATAGAGAATAAGAAGAGGAAGATAGAATCAGAAGGGTGCTTGAAAGTGAGCAAAAGCAACATGGTTGGTTATGACTTTTCATGGACCTCTCATGCTTGTTATGATGGTGACGAAGCTACCAAGAAATGTTCGAAGGTTGAAGCAAGAGTTGCAGGAAAAGATGTACTTATCAGAGTAACGTTTGAGATGCAAAGGAACATTGTGCAGAATGTAATGGCCAAGCTTGAAGCTCATAATCTCTTTGTTCTTTGCAGCAATGTTTTGCCTTTGGGAATTTCCCAGGTTTGGTAG 366 0.4098 MDKVSVLNKAIEYVRSLEQRVKDLEIENKKRKIESEGCLKVSKSNMVGYDFSWTSHACYDGDEATKKCSKVEARVAGKDVLIRVTFEMQRNIVQNVMAKLEAHNLFVLCSNVLPLGISQVW 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2815g00011 121 Coils Coil 7 34 - -
Vium2815g00011 121 Gene3D - 1 41 IPR036638 GO:0046983
Vium2815g00011 121 PANTHER BHLH TRANSCRIPTION FACTOR 1 116 - -
Vium2815g00011 121 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 32 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2815g00011 Vium-Chr2815 183335 183700 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2815g00011 1 116 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.621 2.02e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2815g00011 - - vum:124831956 243.432