LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2815g00010	ATGGAACTTGTCGCTGGACCATTAATGGGAGCTATTTTCAACGTGTTGCTTGAAAGGATAGCTTCCACTGAGGTTGTCAACTTCTTCAAGAACAAAAACTGTGAGAAGTTGCTCAAAAGGTTGAAAATCATCTTGCTGTCAGTCAATGTTGTTCTCAATGATGCTGAGGAAAAGCAAATGAAAAATGGGGCAGTGAAGGAGTGGCTTGAGGAACTCAAAGATGTGGCCTTTGCTGCTGAGGACCTACTTGATGAGATCTACACTGATGCAAAGATCAAGGCAAAACAGGTAAACACGCTTCACTCTGGTCCTATGAGTTTTTATTGTAAAGGGGTTGAAGAGAAAATTGAAGATGTTCATGAGAGATTAGAATTTATCATGAGACAGAAAGAAGTGCTTGATCTGAAAGTGGGTAAGGAAGTCAAAATGGCACACAAGACTCCAACCTCATCTGTAATGGAAGCATGTGATGTGTTCGGAAGAGATAATGATAAAGAATCCTTGGTTGACTTGGTGTTGACTCATAATGAGAAAATAGGTGTTATTCCCATTGTTGGAATGGGAGGAATTGGAAAAACCACCTTAGCTCAACTGATATACAATGATCAAAGAGTGCAGAAGGAATTTGATGTCAAAGCCTGGATTTATGTCTCTGAGGAATTTGACATTTGTAAGATTACAAAAACCCTTTTGGAGGCTGTCACGTCTTGTAGTTGTGACGTTGAGGATTTAAATTTTCTGCAGAGGGATCTAAAAATGCATGTAATGAACAAAAAGTTTTTGTTTGTGTTGGATGACGTGTGGAATGAAAATTATGACAATTGGGACAAGTTCAGGAGTCCATTTAAGCATGCTGGGGAACATGGAAGTAAGATTATTGTAACTACTCGAAGTGGGTGTGTTGCATCCATCATGCAGACTGTTTCACCCTATAATCTCAGAGAGTTGTCCAATGAAGATTCCTGGAATTTATTTTCAAAACATGCATTTGATTATGGTGATTCAAGTTTGCAATTGCATCAAAGTTTAGACAAAGTTGGGAGAGAAATAGTGAGGAAGTGCAAAGGGTTGCCTTTGGCTGTGAAGACACTTGCAGGACTTTTGAGGTGTAAAAGTGATAGACAAGAATGGTGTAAAGTACTGGACAGTGAGATGTGGGATTTGCAAGATTCTGAGAGTAACATTCTTCCGGCTTTAAGATTAAGTTACCATTATCTCCCATCACATTTGAAGAGATGTTTTGCTTATTGTTCAATTTTCCCAAAAGATTATGAATTTGAGAAGGAGAACCTGGTTTTGTTGTGGATGGCAGAGGGTTTTCTCCAACAATCCAAAAGACATAGAAGAATTGAAGAAGTTGGCAATGAGTACTTCTGTGAACTGGTATCTAGATCATTTTTCCAGCAACCAAGGCGTGGCAAGTCATGTTTTCTAATGCATCACCTTGTAAATGATTTGGCTCAGTTTGTGTCAGGAACATTTTCTCTCAGAATGGAATGTAGCAATTCTAATGAAATCAAAGAAAGAACTCGCCATTTGTCACACATTATTGCAGATAGTTCCTCATACGTAAACCTGAAAGATGTTAGCAAAGCAAATTGCCTACGCACTTTTCTGCAAATAAGACCAGTAGGTACATCCATTGATTTGTTCAACAACATGCCAAATGATCTGTTAACAAAGTTAAGGTCCTTAAGGGTGTTATCTTTGGTAGGAACACATATCTATAGCTTACCTAATTCAGTAGGTGAACTAAAGCATCTCCGCTATCTGGAAGTGGCTGATACTGAGATTGTGAGGTTACCCGAATCCATCTGCAGCTTGTTCAATTTACAAACTCTCAAGCTAGTTGGATGTCACAATCTTATTGAACTGCCAGCAAGTATTCATAAGCTTGTTAATTTGCGCCATTTGGATATTAGAGGAACAAGTTTAAGGTGGATGCCATTGCAAATCAATGAGTTAAACAGCCTCCAAAATTTGAGTGACTTTTTTGTGGGAAAGGGATGTGGATCTTCCCTCGGTGAATTGGGTGAGTTAATATGCTTACATGGAGAATTGTTTATTCATTGCCTAGAACACATTGTTAGTGACAAGGATTGTGAAAAGGCAAAGTTGAAGGAAAAGCATGGTCTTGAAAAGTTGTCTTTGGACTGGTGTGGGAATGGTGAAACTGAGAACTCTCAGAAAGAAAAAACCATACTGAACAGCCTGCAACCACATACAAATTTGAAGAAGCTGGATATCTATGACTATCCAGGTACAGAATTTCCAGAGTGGTTGGGGGATCACTCCTTCTACAATTTGGTGTCCTTAATGCTTAATGGCTGTAAATATTGCTATAGGCTGCCTCCCCTTGGACAACTTCCAATGTTGAAAGAGCTTCAGATCAGTAAATTTGAGGGACTAGTGAGTGTGGGATCTGAGTTTCTTGGAAATAGAACCTCTTATTTAACTGATTGCTTTCCTTCACTAGAAATTCTAAGGATTGAGTCTATACCATTATGGGAGAAATGGTATCCTAATGCTGAAAATGCAGGAAGTAAAGCTTTCTTTTATCTTAGAGAGATTCATATTGGAAACTGTCCCAAACTGAGGGGGGATTTACCAGATAACCTTCCATCTTTGACATTACTTGTAATCAGAGATTGTAAACGTCTACTTTGTTCACTTCCTAATTCTCCATCTCTGCGCGTGTTGAACATTCAGAATTGTGAGAGTCTAGAATTCAAAGTACACTCACCTCTGTGCCACCAATCACTGACATCATTGTTCTTGCATGGAAGCTGTGACTCACTCGTGTTCTTGCCTTTAGATCTCTTCCCCAATATCAAGTCTTTGGATATATGGGGATGTAAAAATCTTGAAGCACTTACTGTTTCAGAATCAGATGCAACCCGTCCAAATTTGAAGTCCCTCCATTCCTTGCGCATAAGGCACTGTCCAAATTTCACATCATTTCCCAAGGGTGGATTTGCAGCATCAAAGCTCACTTTGTTAACCATCAACTACTGTCAGAAGTTGAATTCTCTGCCTGAACAAATGCATGACCTTATGCCAAGTTTGAAGGAAGTTCAACTGAGGGGATGTCCCAAAATTGAGTCATCAAGTACGAGGCCACTAAGGATCAGGATTTGCAGCAAACACATGGAAGGCAAACAAAACCTCTCTGATCCTCTCTTTGCAAGGTTGAAAGGTCTGGCTACTGATCAAAGCCCCTCATCAAGTTAG	3231	0.3949	MELVAGPLMGAIFNVLLERIASTEVVNFFKNKNCEKLLKRLKIILLSVNVVLNDAEEKQMKNGAVKEWLEELKDVAFAAEDLLDEIYTDAKIKAKQVNTLHSGPMSFYCKGVEEKIEDVHERLEFIMRQKEVLDLKVGKEVKMAHKTPTSSVMEACDVFGRDNDKESLVDLVLTHNEKIGVIPIVGMGGIGKTTLAQLIYNDQRVQKEFDVKAWIYVSEEFDICKITKTLLEAVTSCSCDVEDLNFLQRDLKMHVMNKKFLFVLDDVWNENYDNWDKFRSPFKHAGEHGSKIIVTTRSGCVASIMQTVSPYNLRELSNEDSWNLFSKHAFDYGDSSLQLHQSLDKVGREIVRKCKGLPLAVKTLAGLLRCKSDRQEWCKVLDSEMWDLQDSESNILPALRLSYHYLPSHLKRCFAYCSIFPKDYEFEKENLVLLWMAEGFLQQSKRHRRIEEVGNEYFCELVSRSFFQQPRRGKSCFLMHHLVNDLAQFVSGTFSLRMECSNSNEIKERTRHLSHIIADSSSYVNLKDVSKANCLRTFLQIRPVGTSIDLFNNMPNDLLTKLRSLRVLSLVGTHIYSLPNSVGELKHLRYLEVADTEIVRLPESICSLFNLQTLKLVGCHNLIELPASIHKLVNLRHLDIRGTSLRWMPLQINELNSLQNLSDFFVGKGCGSSLGELGELICLHGELFIHCLEHIVSDKDCEKAKLKEKHGLEKLSLDWCGNGETENSQKEKTILNSLQPHTNLKKLDIYDYPGTEFPEWLGDHSFYNLVSLMLNGCKYCYRLPPLGQLPMLKELQISKFEGLVSVGSEFLGNRTSYLTDCFPSLEILRIESIPLWEKWYPNAENAGSKAFFYLREIHIGNCPKLRGDLPDNLPSLTLLVIRDCKRLLCSLPNSPSLRVLNIQNCESLEFKVHSPLCHQSLTSLFLHGSCDSLVFLPLDLFPNIKSLDIWGCKNLEALTVSESDATRPNLKSLHSLRIRHCPNFTSFPKGGFAASKLTLLTINYCQKLNSLPEQMHDLMPSLKEVQLRGCPKIESSSTRPLRIRICSKHMEGKQNLSDPLFARLKGLATDQSPSSS	1076

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2815g00010	1076	Coils	Coil	109	129	-	-
	Vium2815g00010	1076	PANTHER	DISEASE RESISTANCE PROTEIN RP	59	946	IPR044974	GO:0006952
	Vium2815g00010	1076	FunFam	Probable disease resistance protein At1g61300	141	310	-	-
	Vium2815g00010	1076	Gene3D	-	402	489	IPR036388	-
	Vium2815g00010	1076	Gene3D	Ribonuclease Inhibitor	526	885	IPR032675	-
	Vium2815g00010	1076	Pfam	Rx N-terminal domain	9	91	IPR041118	-
	Vium2815g00010	1076	PRINTS	Disease resistance protein signature	892	908	-	-
	Vium2815g00010	1076	PRINTS	Disease resistance protein signature	254	268	-	-
	Vium2815g00010	1076	PRINTS	Disease resistance protein signature	181	196	-	-
	Vium2815g00010	1076	PRINTS	Disease resistance protein signature	354	368	-	-
	Vium2815g00010	1076	FunFam	Probable disease resistance protein At5g66910	315	402	-	-
	Vium2815g00010	1076	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	147	417	IPR027417	-
	Vium2815g00010	1076	Gene3D	-	13	125	-	-
	Vium2815g00010	1076	FunFam	Probable disease resistance protein At1g63360	403	489	-	-
	Vium2815g00010	1076	Pfam	NB-ARC domain	173	403	IPR002182	GO:0043531
	Vium2815g00010	1076	Gene3D	Ribonuclease Inhibitor	914	1055	IPR032675	-
	Vium2815g00010	1076	Gene3D	-	139	309	IPR027417	-
	Vium2815g00010	1076	SUPERFAMILY	L domain-like	545	991	-	-
	Vium2815g00010	1076	Gene3D	-	315	401	IPR042197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2815g00010	Vium-Chr2815	147048	150847	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2815g00010	179	649	WRKY Transcription Factor Family	AT5G45050	23.320	4.77e-08	55.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2815g00010	-		-	vum:124831962	2150.17