Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2815g00009 ATGGATATTCTGCTGAGCTTAGTTCCGAACCAATTAATGTTATACTTGAGAGGCTGGAGCAAGAGGCTTTTGCTAAGGTTTGGACTCAAGGCCTTGGAAGCTAGTTCTGAAGCTCAAAGTGTTCCAGATGTTCCTGAAGCACAAATGGTTAGTGAGAAACTTTGGGTTGATAAATATGCTCCGAAATCCTTCACCGAGCTTCTCAGTGATGAACAGACAAATCGTGAGGTACTGTTATGGTTGAAGCAATGGGATTCTGTTGTGTTTGGATCTGAAATTCGGAGCACATCAGATGATGTTTTGTCTGCTTTGAAACGCCATTCTTCTATTGTCCACAATCAGAAACCTTTGAATTCAAAGTTTCCTAGGAAGAATGGAGGATCCAAATGGAGTAATGGGGGAAGGTATGTAAATTCTGTAAGTATGGATGACAGTGGTAGTTCAAAGAGTACTCAAGATGCATGGAGTACGAAGTCAAGGAATATTGGTCCCCCAGAACAAAAGATCCTTCTGCTATGTGGACCACCAGGTCTTGGAAAAACAACACTAGCACATGTAGCTGCTAGGCATTGTGGATATCATGTGGTAGAGATTAATGCTAGTGATGATCGTTCTACATCAACAATTGAAGCCAAGATTCTTGATGTGGTTCAAATGAACTCTGTCTTGTCTGATTCAAGGCCGAAGTGTCTGGTGGTGGATGAAATTGATGGAGCTCTTGGTGACGGTAAGGGTGCTGTGGAGGTCCTTCTAAAGATGATTTCTACCGAAAGGAAGCCTTATGCAGGGAAACAAACTGTGGGCAAAGGACAACTGGAGAGAAAGTCATCAAAAAAGGGTTCGAAAACTGCTTCGCTTTCAAGACCTGTGATATGCATTTGCAATGATCTATATGCACCTGCCTTAAGACCATTGCGTCAGGTAGCTAAGGTTCATATATTTGTTCAACCAACAGTCAATCGTGCAGTGAGCAGGCTGACATACATATGCAAGAAGGAGGGGATGAAAGCCAGTGCAATTGCACTCACTGCTCTTGCAGAATATACAGAATGTGATATTAGATCATGCTTGAACACTCTCCAATTTCTCTCAAAGAAGAAAGAAGCTCTCAATGTGTTTGATATTGGTTCTCAAGTAGTTGGCCAGAAGGACACATCAAAGAATGTTTTTGACATCTGGAAAGAGATTTTCCATAAGCGAAGAACAAAAAAGTTGGAAAGAAAATCTCATAGAGGGAATTCCTTTGACTTTGACTCACTGTACTCCCTTGTGTCAAAACGAGGTGATAGTGACTTGATTCTGGATGGAATTCATGAAAATGTTTTGCGGCTCAATTATCATGACCCACTGATGCAGAAAACTGTCAAGTGCTTCAACAATCTTGGAGTTTATGATCTATTGCATCAATATATAGTGCATACACATCATATGTCCCTTTATGTATATTTGCCCCTAGTTGCAATTACTGTACATCATATAGTATCTCAAATTCAGAAACCAAACATTGAATGGCCAAAGTCCTATCAGAGATATCGTACAATGATGATGGAAAAGATGGACATTTTGAATAATTGGCACCACAAAATCCCACCGCATATTGGAAGGCACTTATCAGCTAGTTCCTTTGTAGAAGACTTAATTTCTCCATTGTTACATATTCTGTCCCCGCCAACTATAAGACCGGTGGCATTACAAGTACTATCTGACACGGAGAAGAATGATCTTGCTCAATTAGTTAGCAAAATGGTATCATATGCTATAACATATAAAACTGTGAAATCAGATATGCCGTATCAAACCCTGAAGTCTGAAGTAGCAGATGGTTTGGCACTGTCTTTTGTTCCTCCTATCAGTGACTTTATAAACTTCAAGGATTATACTTCAAATCATTATGTGCTTTCTGTAGCTATGAAGCAGCTTTTGGTACATGAGGTTGAAAAGCATAAGATTTTACAAGTTGGTGTTGACAAAACTAGGGCTTTAGCAAATGAAGGGCATGGAATCATTGAGACTGAAACTCACAACATCCCATTAGCCAATACCAATGCTGTGGCAAGGAAATCAAATGCAAATCCCACAATAGTTTCATCAAACTTGAATACCAATAAAAGTTCAAGTACAACAGATATTGGGAAACCACAAAACGTGGGAAATATTAAAAAAGCAACCAGAAGTTCTTCCAGTTTCTTTGATAGGTTTAAAAAGGTAAATACTAAGGGCGTACAAAGTAATGACAGATCTCTACCAGAAGAAGCTATCTTGGAGAAAGATCGATACCCTTTACTTTTTAAATTTAATGAGGGCTTTACTAATGCAGTCAAAAGACCTGTCCGTATTCGGGAATTTCTATCTTAA 2355 0.3928 MDILLSLVPNQLMLYLRGWSKRLLLRFGLKALEASSEAQSVPDVPEAQMVSEKLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSVVFGSEIRSTSDDVLSALKRHSSIVHNQKPLNSKFPRKNGGSKWSNGGRYVNSVSMDDSGSSKSTQDAWSTKSRNIGPPEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEINASDDRSTSTIEAKILDVVQMNSVLSDSRPKCLVVDEIDGALGDGKGAVEVLLKMISTERKPYAGKQTVGKGQLERKSSKKGSKTASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVNRAVSRLTYICKKEGMKASAIALTALAEYTECDIRSCLNTLQFLSKKKEALNVFDIGSQVVGQKDTSKNVFDIWKEIFHKRRTKKLERKSHRGNSFDFDSLYSLVSKRGDSDLILDGIHENVLRLNYHDPLMQKTVKCFNNLGVYDLLHQYIVHTHHMSLYVYLPLVAITVHHIVSQIQKPNIEWPKSYQRYRTMMMEKMDILNNWHHKIPPHIGRHLSASSFVEDLISPLLHILSPPTIRPVALQVLSDTEKNDLAQLVSKMVSYAITYKTVKSDMPYQTLKSEVADGLALSFVPPISDFINFKDYTSNHYVLSVAMKQLLVHEVEKHKILQVGVDKTRALANEGHGIIETETHNIPLANTNAVARKSNANPTIVSSNLNTNKSSSTTDIGKPQNVGNIKKATRSSSSFFDRFKKVNTKGVQSNDRSLPEEAILEKDRYPLLFKFNEGFTNAVKRPVRIREFLS 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2815g00009 784 SMART AAA_5 166 320 IPR003593 GO:0016887
Vium2815g00009 784 CDD HLD_clamp_RFC 317 375 - -
Vium2815g00009 784 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 30 783 - -
Vium2815g00009 784 Pfam ATPase family associated with various cellular activities (AAA) 170 296 IPR003959 GO:0005524|GO:0016887
Vium2815g00009 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 365 IPR027417 -
Vium2815g00009 784 Gene3D - 317 387 - -
Vium2815g00009 784 MobiDBLite consensus disorder prediction 115 161 - -
Vium2815g00009 784 FunFam Chromosome transmission fidelity protein 18 317 384 - -
Vium2815g00009 784 Gene3D - 52 315 IPR027417 -
Vium2815g00009 784 CDD AAA 165 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2815g00009 Vium-Chr2815 113072 141379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2815g00009 167 447 Core DNA Replication Machinery Family AT5G22010 27.946 1.43e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2815g00009 K11269 - gmx:100785041 1269.6