Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2815g00008 ATGGACATAGATGATATGGAAATGGATATTCCGCTCCCTGATGAACTGGAGTTTCTGGAATCAAATTTTCACGAACCCGAGCAAAATCAAGAAGGAGAAGATCATCATTATCACTTCGCAGACCTCGAACCCCCGGCTGAACCGTACTCTCCACAACCGCCACCAGATCTCGAGGCTCCTTCGGTGGATATCGAATCAAGCGGTCACAAGCGGTCGCGTTCGAGTTCACCTCCCGAAGAGGACAAGAGAGCGAAAGTTAGGGTTACCGTCGAGGAGGTTTCCTCCGCCGAGGAGGCCGCCGACGAGGACTGGCTTCGCTACTCTCCTCCACCGCAGGAGCCGGCGGCGAAGGAAACAACGTTCGCGAAGGAGAAGACGTTGTCGAGATTCGCCTCGGAGATTGATGGCGAGTGCATGCCGATCACCGCGCCCAACGGCGACAGGGTTTATGCGAAGCTTACCCGGTTTCAAGGAGAAGAGCGCGTGAAGACGCTCGATTGCAATGGATATTCTGCTGAGCTTAGTTCCGAACCAATTAATGTTATACTTGAGAGGCTGGAGCAAGAGGCTTTTGCTAAGGCCTTGGAAGCTAGTTCTGAAGCTCAAAGTGTTCCAGATGTTCCTGAAGCACAAATGGTTAGTGAGAAACTTTGGGTTGATAAATATGCTCCGAAATCCTTCACCGAGCTTCTCAGTGATGAACAGACAAATCGTGAGGTACTGTTATGGTTGAAGCAATGGGATTCTGTTGTGTTTGGATCTGAAATTCGGAGCACATCAGATGATGTTTTGTCTGCTTTGAAACGCCATTCTTCTATTGTCCACAATCAGAAACCTTTGAATTCAAAGTTTCCTAGGAAGAATGGAGGATCCAAATGGAGTAATGGGGGAAGGTATGTAAATTCTGTAAGTATGGATGACAGTGGTAGTTCAAAGAGTACTCAAGATGCATGGAGTACGAAGTCAAGGAATATTGGTCCCCCAGAACAAAAGATCCTTCTGCTATGTGGACCACCAGGTCTTGGAAAAACAACACTAGCACATGTAGCTGCTAGGCATTGTGGATATCATGTGGTAGAGATTAATGCTAGTGATGATCGTTCTACATCAACAATTGAAGCCAAGATTCTTGATGTGGTTCAAATGAACTCTGTCTTGTCTGATTCAAGGCCGAAGTGTCTGGTGGTGGATGAAATTGATGGAGCTCTTGGTGACGGTAAGGGTGCTGTGGAGGTCCTTCTAAAGATGATTTCTACCGAAAGGAAGCCTTATGCAGGGAAACAAACTGTGGGCAAAGGACAACTGGAGAGAAAGTCATCAAAAAAGGGTTCGAAAACTGCTTCGCTTTCAAGACCTGTGATATGCATTTGCAATGATCTATATGCACCTGCCTTAAGACCATTGCGTCAGGTAGCTAAGGTTCATATATTTGTTCAACCAACAGTCAATCGTGCAGTGAGCAGGCTGACATACATATGCAAGAAGGAGGGGATGAAAGCCAGTGCAATTGCACTCACTGCTCTTGCAGAATATACAGAATGTGATATTAGATCATGCTTGAACACTCTCCAATTTCTCTCAAAGAAGAAAGAAGCTCTCAATGTGTTTGATATTGGTTCTCAAGTAGTTGGCCAGAAGGACACATCAAAGAATGTTTTTGACATCTGGAAAGAGATTTTCCATAAGCGAAGAACAAAAAAGTTGGAAAGAAAATCTCATAGAGGGAATTCCTTTGACTTTGACTCACTGTACTCCCTTGTGTCAAAACGAGGTGATAGTGACTTGATTCTGGATGGAATTCATGAAAATGTTTTGCGGCTCAATTATCATGACCCACTGATGCAGAAAACTGTCAAGTGCTTCAACAATCTTGGAGTTTATGATCTATTGCATCAATATATAGTGCATACACATCATATGTCCCTTTATGTATATTTGCCCCTAGTTGCAATTACTGTACATCATATAGTATCTCAAATTCAGAAACCAAACATTGAATGGCCAAAGTCCTATCAGAGATATCGTACAATGATGATGGAAAAGATGGACATTTTGAATAATTGGCACCACAAAATCCCACCGCATATTGGAAGGCACTTATCAGCTAGTTCCTTTGTAGAAGACTTAATTTCTCCATTGTTACATATTCTGTCCCCGCCAACTATAAGACCGGTGGCATTACAAGTACTATCTGACACGGAGAAGAATGATCTTGCTCAATTAGTTAGCAAAATGGTATCATATGCTATAACATATAAAACTGTGAAATCAGATATGCCGTATCAAACCCTGAAGTCTGAAGTAGCAGATGGTTTGGCACTGTCTTTTGTTCCTCCTATCAGTGACTTTATAAACTTCAAGGATTATACTTCAAATCATTATGTGCTTTCTGTAGCTATGAAGCAGCTTTTGGTACATGAGGTTGAAAAGCATAAGATTTTACAAGTTGGTGTTGACAAAACTAGGGCTTTAGCAAATGAAGGGCATGGAATCATTGAGACTGAAACTCACAACATCCCATTAGCCAATACCAATGCTGTGGCAAGGAAATCAAATGCAAATCCCACAATAGTTTCATCAAACTTGAATACCAATAAAAGTTCAAGTACAACAGATATTGGGAAACCACAAAACGTGGGAAATATTAAAAAAGCAACCAGAAGTTCTTCCAGTTTCTTTGATAGGTTTAAAAAGGTAAATACTAAGGGCGTACAAAGTAATGACAGATCTCTACCAGAAGAAGCTATCTTGGAGAAAGATCGATACCCTTTACTTTTTAAATTTAATGAGGGCTTTACTAATGCAGTCAAAAGACCTGTCCGTATTCGGGAATTTCTATCTTAA 2844 0.4205 MDIDDMEMDIPLPDELEFLESNFHEPEQNQEGEDHHYHFADLEPPAEPYSPQPPPDLEAPSVDIESSGHKRSRSSSPPEEDKRAKVRVTVEEVSSAEEAADEDWLRYSPPPQEPAAKETTFAKEKTLSRFASEIDGECMPITAPNGDRVYAKLTRFQGEERVKTLDCNGYSAELSSEPINVILERLEQEAFAKALEASSEAQSVPDVPEAQMVSEKLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSVVFGSEIRSTSDDVLSALKRHSSIVHNQKPLNSKFPRKNGGSKWSNGGRYVNSVSMDDSGSSKSTQDAWSTKSRNIGPPEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEINASDDRSTSTIEAKILDVVQMNSVLSDSRPKCLVVDEIDGALGDGKGAVEVLLKMISTERKPYAGKQTVGKGQLERKSSKKGSKTASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVNRAVSRLTYICKKEGMKASAIALTALAEYTECDIRSCLNTLQFLSKKKEALNVFDIGSQVVGQKDTSKNVFDIWKEIFHKRRTKKLERKSHRGNSFDFDSLYSLVSKRGDSDLILDGIHENVLRLNYHDPLMQKTVKCFNNLGVYDLLHQYIVHTHHMSLYVYLPLVAITVHHIVSQIQKPNIEWPKSYQRYRTMMMEKMDILNNWHHKIPPHIGRHLSASSFVEDLISPLLHILSPPTIRPVALQVLSDTEKNDLAQLVSKMVSYAITYKTVKSDMPYQTLKSEVADGLALSFVPPISDFINFKDYTSNHYVLSVAMKQLLVHEVEKHKILQVGVDKTRALANEGHGIIETETHNIPLANTNAVARKSNANPTIVSSNLNTNKSSSTTDIGKPQNVGNIKKATRSSSSFFDRFKKVNTKGVQSNDRSLPEEAILEKDRYPLLFKFNEGFTNAVKRPVRIREFLS 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2815g00008 947 MobiDBLite consensus disorder prediction 18 42 - -
Vium2815g00008 947 MobiDBLite consensus disorder prediction 278 324 - -
Vium2815g00008 947 Gene3D - 215 478 IPR027417 -
Vium2815g00008 947 CDD HLD_clamp_RFC 480 538 - -
Vium2815g00008 947 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 6 946 - -
Vium2815g00008 947 Gene3D - 480 550 - -
Vium2815g00008 947 SMART AAA_5 329 483 IPR003593 GO:0016887
Vium2815g00008 947 Pfam ATPase family associated with various cellular activities (AAA) 333 459 IPR003959 GO:0005524|GO:0016887
Vium2815g00008 947 MobiDBLite consensus disorder prediction 63 104 - -
Vium2815g00008 947 MobiDBLite consensus disorder prediction 1 119 - -
Vium2815g00008 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 528 IPR027417 -
Vium2815g00008 947 FunFam Chromosome transmission fidelity protein 18 480 547 - -
Vium2815g00008 947 CDD AAA 328 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2815g00008 Vium-Chr2815 112537 141379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2815g00008 330 610 Core DNA Replication Machinery Family AT5G22010 27.946 7.59e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2815g00008 K11269 - gmx:100785041 1516.13