Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2815g00006 ATGGCTTCTCAAAATCCAGCGGAAGATGAAAACTCAAAGCAAAATTGGTCCCTCCAAGACTTCGAGATCGGTAAACCTCTCGGCAGGGGCAAATTTGGTAGAGTTTATGTTGCCAGAGAAGTCAAGAGCAATTTTGTTGTGGCGTTGAAGATTATATTCAAGGAACAAATTGATAAGTATAAAATTCATCACCAACTAAGGAGAGAGATGGAGATACAGACCAGTCTTCGGCACCCTAATATCCTGCGTCTTTATGGTTGGTTTCATGACACTGACCGTGTTTTCTTGATTCTCGAGTATGCTCATAAAGGTGAGGTCTACAAAGAGATGAGAAAGAAGGGTCACTTTACAGAGAAACAAGCTGCTACGTATATTTTGAGCCTCACAAAGGCGTTGGCTTATTGCCACGAGAAGCATGTTATTCATAGGGATATCAAGCCTGAAAATTTGTTGCTGGATCACGAGGGTCGTCTTAAAATTGGAGACTTTGGTTGGTCTGTTCAGTCTAAAAGCAAAAGACATACCATGTGTGGCACATTGGATTATTTAGCACCAGAAATGGTTGAAAATAAAGCTCATGACTCTGCTGTTGATAACTGGACTCTTGGTATCCTTTGTTATGAGTTCCTCTTTGGTGCCCCTCCATTTGAGGCTGAGAGTCAAGCTGATACCTTCAAAAGGATAATGAAGGTTGACCTAAGCTTCCCTTCCAACCCTTCTGTTTCTTTAGATGCCAAAAGTCTGATTAGCCGGCTTCTGGTGAAGGACTCCTCACGAAGGCTCTCTCTTCAGAAGATAATGGAACATCCTTGGATAGTCAAGAATGCAGATTTTTCGGCTTGA 843 0.4211 MASQNPAEDENSKQNWSLQDFEIGKPLGRGKFGRVYVAREVKSNFVVALKIIFKEQIDKYKIHHQLRREMEIQTSLRHPNILRLYGWFHDTDRVFLILEYAHKGEVYKEMRKKGHFTEKQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIGDFGWSVQSKSKRHTMCGTLDYLAPEMVENKAHDSAVDNWTLGILCYEFLFGAPPFEAESQADTFKRIMKVDLSFPSNPSVSLDAKSLISRLLVKDSSRRLSLQKIMEHPWIVKNADFSA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2815g00006 280 PIRSF ILK 1 271 - -
Vium2815g00006 280 SMART serkin_6 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2815g00006 280 Pfam Protein kinase domain 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2815g00006 280 Gene3D Transferase(Phosphotransferase) domain 1 105 279 - -
Vium2815g00006 280 SUPERFAMILY Protein kinase-like (PK-like) 15 275 IPR011009 -
Vium2815g00006 280 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524
Vium2815g00006 280 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
Vium2815g00006 280 CDD STKc_Aurora 20 273 - -
Vium2815g00006 280 FunFam Aurora kinase A 13 104 - -
Vium2815g00006 280 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vium2815g00006 280 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 10 277 IPR030616 GO:0004672
Vium2815g00006 280 ProSiteProfiles Protein kinase domain profile. 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2815g00006 280 FunFam Serine/threonine-protein kinase ark1 13 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2815g00006 Vium-Chr2815 91965 106009 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2815g00006 21 275 CBL-interacting serine-threonine protein kinases AT5G10930 39.695 4.86e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vium2815g00006 Pkinase 2.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2815g00006 K08850 - gmx:100800111 534.643