Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2811g00024 ATGTTGTGTCTGCTACTGTTCATCATGTTTCTGCTTCCTCTCAGAGGAGAACCAACAACGTGCCAAACAGCGTCATGCGGAAAAATCAAAATTCAGTTTCCATTTGGTTTGAGACAAACTCGAATGCAAAAAGAAAGCTCTGGTCGGTGTAACTATCCGAGATTCCAACTTTTCTGCGACAACCGTAACCGAACCATTCTGAGCCTCCCAGGTTCCGGCGATTTGGTGGTGAAAAGCATAAATTACAAGTCCCAAACCGTTAAGGTGAACGATCCCGAAGGTTGTCTCCCGAAACGTTTCTTGCACAACTTGAGCCTTTTCCTGCACCCACCGTTCACGTTTGAGGCAACCGTTTACGACCTAACCTTCCTTCGTTGTCCTTCCAACACAACACACACCATTCCATCCCCGCCAATTTCATGCCTCGAGTCCAATTCCTCCTCCTCCGTCACATTCTCGTGGTGGCCTCTCAGTGGCACGCCGCCGTGGAGTGACGAGTGCGAGGTGATATCCTCGGCTTTTGTTCCCATTCCAAATCCAGATACGACATCGTTTTTCTTGCCCGATCTCAACAAGGATGTCGTGTTGAAGTGGAACGAACCCGCGTGTGGGGATTGTGCTGGTCGGGGCCAAGTTTGTGGATTCACCGATGACACCAACAATTTACAAGTTGGATGCTTCTTCTCTACTCGTAACCAAAACCAAGGTCTTTCAAGAGGCGCAAAATATGGCTTAACGATCGGAGTGGGAATACCTGGACTCCTATGTTTAACTGGGCTTTGCTGCTTTATGTGTAGTAAATTCGATGTGTACACACATGGTCGCCGGGCCAGGCCCAGGCCCAGCACAGAGCTTCCAAGCTCTACTACCACTCTTCCACGCTCCTCTTCGTTAATGGGCCTTAATGGGCCGGAAATTGAAAAATTCCCGAAGACTCTTATTGGTGACAGTGGGCGCTTACCGAATTGGAGCGATAACACGTGTCCAATATGTCTCTCCGAATATGAACCCAAGGACACGCTGAGAACCATTCCTGCCTGTAACCATTATTTTCATGCACACTGCATAGATGAGTGGCTGAAGATGAATGCCACGTGTCCCTTATGCAGAAATTCACCTCATCCATCTTCTACCGTCACCCCTCCTTCTTCTTCAACATCTATCCATTCCTCTTTGCCATAG 1182 0.4848 MLCLLLFIMFLLPLRGEPTTCQTASCGKIKIQFPFGLRQTRMQKESSGRCNYPRFQLFCDNRNRTILSLPGSGDLVVKSINYKSQTVKVNDPEGCLPKRFLHNLSLFLHPPFTFEATVYDLTFLRCPSNTTHTIPSPPISCLESNSSSSVTFSWWPLSGTPPWSDECEVISSAFVPIPNPDTTSFFLPDLNKDVVLKWNEPACGDCAGRGQVCGFTDDTNNLQVGCFFSTRNQNQGLSRGAKYGLTIGVGIPGLLCLTGLCCFMCSKFDVYTHGRRARPRPSTELPSSTTTLPRSSSLMGLNGPEIEKFPKTLIGDSGRLPNWSDNTCPICLSEYEPKDTLRTIPACNHYFHAHCIDEWLKMNATCPLCRNSPHPSSTVTPPSSSTSIHSSLP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2811g00024 393 MobiDBLite consensus disorder prediction 276 297 - -
Vium2811g00024 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 375 IPR013083 -
Vium2811g00024 393 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 373 IPR046948 -
Vium2811g00024 393 MobiDBLite consensus disorder prediction 282 297 - -
Vium2811g00024 393 CDD RING-H2_EL5-like 328 370 - -
Vium2811g00024 393 Pfam Wall-associated receptor kinase galacturonan-binding 21 91 IPR025287 GO:0030247
Vium2811g00024 393 SUPERFAMILY RING/U-box 322 379 - -
Vium2811g00024 393 Pfam Ring finger domain 326 370 IPR001841 -
Vium2811g00024 393 ProSiteProfiles Zinc finger RING-type profile. 328 370 IPR001841 -
Vium2811g00024 393 SMART ring_2 328 369 IPR001841 -
Vium2811g00024 393 MobiDBLite consensus disorder prediction 372 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2811g00024 Vium-Chr2811 137227 139703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2811g00024 16 375 C3H Transcription Factor Family AT2G25410 34.853 1.94e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2811g00024 - - ahf:112732430 354.369