Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2811g00013 ATGGAATCAGTGTTTCAAGAAGAAGGGTCATCTTCTGTAACTTCTTCCCCCCTTCAGTTCTTTTCCATGATGTCTCTTTCACCTGGCATAGGATCTCCCTATCCTTGGCTTAGAGAACTGAAATCTGAGGAAAGGGGTTTATATTTGATCCATTTGTTGATCGGTTGTGCCAATCAGGTGGCTAATGGTAGTCTTGAAAATGCAAACATGTTGCTTGAACAGATTTCCCAGCTTGCTTCCCCTGATGGAGATACTATACAGCGAGTTGCTGCATATTTCACCCAAGCACTCGCTGATCGGATACTGAAAACATGGCCTGGTCTCCATAGGGCACTCAATTCCACCAGAATAGCTATGGTGTCTGAAGAAATTCTTGTTCAGAAGCTCTTTTTCGATCTTTTTCCGTTCTTGAAGATGTCATACATTCTGACAAATCAGGCTATTGTTGAAGCCATGGAAGGGGAGAAAATGGTGCATGTAATTGATCTCAATGCCACAGGCCCAGCACAGTGGGTTGCCCTCTTCCGTGTTCTGAGCGCACGCCCTGAAGGCCCTCCTCATTTGAGAATTACTGGGGTGCATCACCAGAAGGAGGTTCTGGATCAGATGGCTCATAAACTCACTGAGGAGGCAGAAAAGTTGGATATCCCATTCCAGTTCAACCCTGTTGTCAGCAAGATAGAAAATCTTGATTTTGACAAACTTCGTGTGAAAACTGGGGAGGCACTGGCAATCAGTTCCATTCTGCAGTTACACTCCCTTTTGGCCTTGGATGACGATGCCTCCAGGAGAAGATCTCCTCTTCCGGCAAACAATTCAAACGCAATTCAACTGCAGAAAATCCTGCAGATGAACCCAAACACACGCTGTGATTTGGTTGATAAGGACATGGTTCACGGCTATAGCCCAAGTCCAGATTCAGCCTCAGCTTCAGCCTCATCCTCGCCAGGATCGTCATCTGCATCAATGAAATCCGAGAGCTTTCTGAATGCCCTGTGGGGGTTATCACCAAAGATCATGGTTGTAACGGAGCAAGACTTCAACCACAACAGTTCAAACCTGATGGATAGGCTGCTAGAATCTCTAAATTCTTATGCTGCATTGTTTGATTGTTTGGAATGCACTGTCTCCAGAGCATCCTTGGATAGAATGAAGATCGAGAAGATGCTTATGGGTGAGGAAATCAAGAACATAGTAGCTTGTGAGGGAGCTGAAAGAAGGGAAAGACATGAAAAGATAGATAAGTGGATCCAGAGACTTGATTTATCTGGTTTTGCAAACGTGCCTTTAAGCTGTCAGGGTGTGACACAGGCAATGAGGTTCTTGGAGAACTATGGCTGTAATGGATATAGAATGAGGGAGGAAAATGGCTCTGTAGTCATTTACTGGCAGGATCGAACCTTGTTTTCTGTGACAGCTTGGAGATCAAGAAGGTAA 1437 0.4495 MESVFQEEGSSSVTSSPLQFFSMMSLSPGIGSPYPWLRELKSEERGLYLIHLLIGCANQVANGSLENANMLLEQISQLASPDGDTIQRVAAYFTQALADRILKTWPGLHRALNSTRIAMVSEEILVQKLFFDLFPFLKMSYILTNQAIVEAMEGEKMVHVIDLNATGPAQWVALFRVLSARPEGPPHLRITGVHHQKEVLDQMAHKLTEEAEKLDIPFQFNPVVSKIENLDFDKLRVKTGEALAISSILQLHSLLALDDDASRRRSPLPANNSNAIQLQKILQMNPNTRCDLVDKDMVHGYSPSPDSASASASSSPGSSSASMKSESFLNALWGLSPKIMVVTEQDFNHNSSNLMDRLLESLNSYAALFDCLECTVSRASLDRMKIEKMLMGEEIKNIVACEGAERRERHEKIDKWIQRLDLSGFANVPLSCQGVTQAMRFLENYGCNGYRMREENGSVVIYWQDRTLFSVTAWRSRR 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2811g00013 478 ProSiteProfiles GRAS family profile. 40 475 IPR005202 -
Vium2811g00013 478 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 471 IPR005202 -
Vium2811g00013 478 Pfam GRAS domain family 49 475 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2811g00013 Vium-Chr2811 59574 62263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2811g00013 1 478 GRAS Transcription Factor Family AT1G50420 63.525 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium2811g00013 GRAS 1e-133 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2811g00013 - - vun:114174232 795.423