Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2809g00023 ATGGTTTCCGGCCGGCCAATCATCCAACGCCGCCGGCCGCCAACACCGTCCCCTAACAACCTCTCCGATATCTGGCCATTTCCCCCGCCTCCAAACGGCCAGACCCGCTACTGCCGGCGCGTGTGCCTCAGTAGGGCTCAGTTTTTTCGGGCAACGGCCTTTTCGGATTTTGGCCCCTGGGGCCGGGGTAGCATTGGCCACAAAAAGAGGCGCGACTCCGAGGAGGAGGAATCGGTTAAGGGCGTCTCCACCAGCAATGGCGTGAAGGAGGGTGGTGGTGTTGGTGATGGGAAACGGGTTAAAACAACAGGGAACCAGAAGAGTGAGAGTGCGAAAGGTGAAGGAGAAAGCAGTTCAGGAAAGCTTGCGGAGCAAGGTGGAAAGCCACCTCCAGAGCCTCCTTCAAAGCAAGATTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTCGCAGAAAGGGCTAGACGGGAAAAACGGATTAGTGAGGAGATGAAAATTCTTCAGGATTTGGTGCCGGGTTGTAATAAGGTTATTGGGAAAGCTTTGGTTCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAGGCCGTAAATTCAAGAATACCCTCCGGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCATCGCATTCGCTTCTCAACCTACAAGAGAGTATAGCCGAGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAAGTGGTTTTGAAAGAGCAACATAG 813 0.508 MVSGRPIIQRRRPPTPSPNNLSDIWPFPPPPNGQTRYCRRVCLSRAQFFRATAFSDFGPWGRGSIGHKKRRDSEEEESVKGVSTSNGVKEGGGVGDGKRVKTTGNQKSESAKGEGESSSGKLAEQGGKPPPEPPSKQDYIHVRARRGQATDSHSLAERARREKRISEEMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIPSGIEVFPPKDFDQQTFDTTGIAFASQPTREYSRGSSPEWLHMQVGSGFERAT 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2809g00023 270 MobiDBLite consensus disorder prediction 63 79 - -
Vium2809g00023 270 SMART finulus 154 205 IPR011598 GO:0046983
Vium2809g00023 270 FunFam Basic helix-loop-helix transcription factor 145 218 - -
Vium2809g00023 270 Pfam Helix-loop-helix DNA-binding domain 152 200 IPR011598 GO:0046983
Vium2809g00023 270 Coils Coil 196 216 - -
Vium2809g00023 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983
Vium2809g00023 270 CDD bHLH_AtBPE_like 138 224 - -
Vium2809g00023 270 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 70 240 IPR024097 GO:0006355
Vium2809g00023 270 MobiDBLite consensus disorder prediction 1 29 - -
Vium2809g00023 270 MobiDBLite consensus disorder prediction 55 137 - -
Vium2809g00023 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 217 IPR036638 GO:0046983
Vium2809g00023 270 Gene3D - 145 219 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2809g00023 Vium-Chr2809 195737 199284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2809g00023 16 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 47.687 3.80e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2809g00023 HLH 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2809g00023 - - gmx:100794893 332.028