Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2809g00020 ATGCCGCTGGAAAGTGACGTCACCATCTCCTCTTACCGCCTCTGCTGGGACGTCTTTCTCAGCTTCCGGGGCACACACACGGGCCACACCTTCACCATGCGCCTCTACCACGCTCTCCACGGTCGTGGCGTTCGCGTCTTCCGAAACGACGATGGGTTGGAGCGCCGCGGCGAGATCCAGAAGAAGCTTCTAGAAGCCGTGGAAGACTCTGCCGCCGCCGTCGTCGTTATCTCTCCCGATTACGCGTCCTCGCACTGGTGCCTGGAAGAGCTCGCAAAGATTTGCGAGGTTGGGAGGCTGATCCTCCCGGTTTTCTACTGGGTGGACCCTTCGCACGTGCGAAAGCAAGAGGGTCCCTTCGAGGAGTGGTTCGTGTGGCATGCACAGAGGTTTCCGACAGAGAGGATTGAGCAGTGGAGGGATGCGATGAAGAAAGTGGGTGGACTCGCTGGTTTTGTTTTGGATGAGAAAAGTGACAAGAGTGATGAACTGATTCAGATTTTGGTGCAAAATCTTATGAAGCAGCTGAGGAACACACCACTGAGTGTGGCTCCATTCACAGTAGGTCTCGATGATAGAGTTGAAGTGTTGAAAAACTTGTTGGACTTAAAATCCAACGATGTAAGGGTTTTGGGGTTGTATGGAATGGGTGGAGTTGGTAAGACAACATTAGCCAAGAGCCTCTTCAACAACCTTGTTGTTCATAGTTTTGAGCGACGGAGTTTCATTCCAAATGTCAGATCACAGGTCTCCAAACACCACGGTTTGGTTTCTCTTCAAAACAAAATCCACGGTGATCTTTGTGGTAGAAAAGAGGATCTGATCACCGATGTCAGCGACGGCATTTCTGCTATACAAAAAATAGTGCAAGAGAATCGAGTTTTGTTGATCCTAGATGACGTTGACGATGTGGAGCAGCTTAACTTTTTGATGGGTAAGAGGGAATGGTTTTACAAGGGAAGTCGTGTAGTGATAACCACAAGGGATAAGGAAATTTTGCACGGGAGTTATGTTGATGTTGATTTTGAGGTGAAGGAATTGGAATTCTCTGCAGCAATGGAACTGTTCTGCTTCCATGCAATCAGAAGAAAGGAACCTGCAGAGGGTTTTTTAGATGTTTCAAAGCAAATTGTGGAGAAGACAGGAGGGTTGCCTTTGGCTTTGGAAGTTTTTGGGTCTTTTCTGTTTGATAAAAGGACCGAGAGGGAATGGAAAGATGCTTTGGAGAAGCTGAAGCAGATTCGTCCTCCATGTCTTCAAGAAGTGCTGAAAATAAGTTTTGATGCGTTGGATGAACAAAAACAGTGTATATTCCTTGACATAGCTTGTTTGTTGGTGCAAATGGAAATGAAGAGAGATGATGTGGTTGACATATTGAATGGATGTGATTTTAGAGGAGAGATTGCGGTGGATGTGCTCACTGCAAGATGTCTAATTAAGATCATTGGTGATGGAAAAGTGTGGATGCATGATCAAGTTAGAGACATGGGAAGGCAAATTGTTCGTAGTGAAAGCCTTACAGATCCTGGTCTACGAAGCAGGCTCTGGGATCGTGATGAAATCTTGACTGTGTTGAAGAATATGAAGGGAACGAGAAATGTTCAAGGAGTTGTCCTAGATTGTGTGAAGAGAAGAATGTCCATTCCCAGAGATCGCTCAGCAGATGAAATAACTAGGGAAAATTTTCGACGCAAGCCCAGTTGTAAATCTGCATTCGAGTATATTAAAGAGAGGTATAAAAAGTACGTAGAGGATAGAAAAGAGAAAGCAAAAGAGGTTATCCTTCAGTCCAAGCACTTTCAACCAATGGTTTCCTTAAGAATGCTTCAGATTAATTATTCCAGATTGGAAGGAAAATTTATATGTCTTCCCCCAAAACTCAAGTGGTTACAATGGAAACAGTGTTCATTAAGGTATATGCCTTCTAGCTATAATCCATTGGAACTTGCAGTCATGGATCTCTCTGAAAGTCTGATTGAAACCTTGTGGAAGGAACGAAGTAACAAGGTGGCTGTGCACTTGACGGTTTTAAACCTCTCCAGGTGCCACCGTTTGACAGCAACTCCTGACTTATCTGGGTATCTGTCTCTTAAAAAACTTAATTTGGAAGAATGTTCTCACTTAACTAGGATTCATGAATCATTAGGGAATCTAAATTCCTTAGTTCATCTTAACTTTCGCCTCTGCTATAACCTCATAGAACTACCTAGTGATGTCTCTGGGCTGAAACACCTCGAGGACCTCGTTCTTTCCGACTGCTGGAAATTGAAAACATTACCAAAAGACTTGAGCTGCATGGTTTCTTTAAGACAACTACTTCTTGATAGCACTTCTATTACTGAGCTTCCTCTGTCCATCTTCCATCTCACAAAACTTGAAAAGCTGAGTGCAAATGGATGCCACCTTCTGAAGAAGTTACCTACCTGCACTGGGAAACTCTGCTCCCTGCAAGAATTATCACTTAACCATACAGCATTGGAGGAATTGCCAGATTCAGTTGGTTCTTTGGAAAAACTTGAGATGCTTAGTTTGACGGGGTGTAAGTCACTATCAGTGATTCCTAACTCTACTGGGAAACTAATTTCCTTGACTCAATTGTATTTGGACGGCAGCGGAATCAAAGAATTGCCTGCTTCTATTGGTGCTTTATCATATTTAAGGAAGCTGTCTGTTGAAGACTGTACTTCTCTTGACAAATTTCCTGTCTCGATGGAGGCATTAGTTTCAATTGTTGAACTTAAGTTAGATGGCACAAAAGTTTCTAATTTTCCAGAAGAAATATTTGTGGGCATGAAAATGCTAGAAAAGCTCGAGATGGGAAAAGTTCAGCATCTAAAATTCGTACCAGTATCATTGGGCTACCTGTCAGCTCTTACCATTTTGGACATGCATGATGCAAACATTACTGAATTGCCAGAATCAATAGGAATGTTGGAAAATCTTATTCGGCTGAGGTTAGACAAGTGCAAACAGCTCCAAAGGCTTCCAGACTCCATTGGAAATTTGAAATCTTTGCGATGGCTAATGATGAAG 3033 0.4332 MPLESDVTISSYRLCWDVFLSFRGTHTGHTFTMRLYHALHGRGVRVFRNDDGLERRGEIQKKLLEAVEDSAAAVVVISPDYASSHWCLEELAKICEVGRLILPVFYWVDPSHVRKQEGPFEEWFVWHAQRFPTERIEQWRDAMKKVGGLAGFVLDEKSDKSDELIQILVQNLMKQLRNTPLSVAPFTVGLDDRVEVLKNLLDLKSNDVRVLGLYGMGGVGKTTLAKSLFNNLVVHSFERRSFIPNVRSQVSKHHGLVSLQNKIHGDLCGRKEDLITDVSDGISAIQKIVQENRVLLILDDVDDVEQLNFLMGKREWFYKGSRVVITTRDKEILHGSYVDVDFEVKELEFSAAMELFCFHAIRRKEPAEGFLDVSKQIVEKTGGLPLALEVFGSFLFDKRTEREWKDALEKLKQIRPPCLQEVLKISFDALDEQKQCIFLDIACLLVQMEMKRDDVVDILNGCDFRGEIAVDVLTARCLIKIIGDGKVWMHDQVRDMGRQIVRSESLTDPGLRSRLWDRDEILTVLKNMKGTRNVQGVVLDCVKRRMSIPRDRSADEITRENFRRKPSCKSAFEYIKERYKKYVEDRKEKAKEVILQSKHFQPMVSLRMLQINYSRLEGKFICLPPKLKWLQWKQCSLRYMPSSYNPLELAVMDLSESLIETLWKERSNKVAVHLTVLNLSRCHRLTATPDLSGYLSLKKLNLEECSHLTRIHESLGNLNSLVHLNFRLCYNLIELPSDVSGLKHLEDLVLSDCWKLKTLPKDLSCMVSLRQLLLDSTSITELPLSIFHLTKLEKLSANGCHLLKKLPTCTGKLCSLQELSLNHTALEELPDSVGSLEKLEMLSLTGCKSLSVIPNSTGKLISLTQLYLDGSGIKELPASIGALSYLRKLSVEDCTSLDKFPVSMEALVSIVELKLDGTKVSNFPEEIFVGMKMLEKLEMGKVQHLKFVPVSLGYLSALTILDMHDANITELPESIGMLENLIRLRLDKCKQLQRLPDSIGNLKSLRWLMMK 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2809g00020 1011 Gene3D - 178 340 IPR027417 -
Vium2809g00020 1011 SUPERFAMILY L domain-like 612 901 - -
Vium2809g00020 1011 Gene3D Ribonuclease Inhibitor 850 1011 IPR032675 -
Vium2809g00020 1011 SUPERFAMILY "Winged helix" DNA-binding domain 420 526 IPR036390 -
Vium2809g00020 1011 Pfam TIR domain 16 180 IPR000157 GO:0007165
Vium2809g00020 1011 Gene3D Ribonuclease Inhibitor 591 756 IPR032675 -
Vium2809g00020 1011 SMART LRR_typ_2 860 883 IPR003591 -
Vium2809g00020 1011 SMART LRR_typ_2 766 789 IPR003591 -
Vium2809g00020 1011 SMART LRR_typ_2 907 930 IPR003591 -
Vium2809g00020 1011 SMART LRR_typ_2 813 836 IPR003591 -
Vium2809g00020 1011 SMART LRR_typ_2 955 978 IPR003591 -
Vium2809g00020 1011 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 820 IPR044974 GO:0006952
Vium2809g00020 1011 Gene3D Ribonuclease Inhibitor 757 849 IPR032675 -
Vium2809g00020 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 441 IPR027417 -
Vium2809g00020 1011 Gene3D - 347 431 IPR042197 -
Vium2809g00020 1011 ProSiteProfiles TIR domain profile. 14 176 IPR000157 GO:0007165
Vium2809g00020 1011 Gene3D - 15 177 IPR035897 -
Vium2809g00020 1011 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 152 IPR035897 -
Vium2809g00020 1011 SUPERFAMILY L domain-like 900 1009 - -
Vium2809g00020 1011 PRINTS Disease resistance protein signature 381 395 - -
Vium2809g00020 1011 PRINTS Disease resistance protein signature 288 302 - -
Vium2809g00020 1011 PRINTS Disease resistance protein signature 210 225 - -
Vium2809g00020 1011 PRINTS Disease resistance protein signature 834 850 - -
Vium2809g00020 1011 Pfam NB-ARC domain 193 413 IPR002182 GO:0043531
Vium2809g00020 1011 SMART till_3 15 149 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2809g00020 Vium-Chr2809 178630 183139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2809g00020 721 958 WRKY Transcription Factor Family AT4G12020 30.769 8.00e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2809g00020 - - vum:124831905 1999.56