Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2809g00018 ATGCCGTCCCACGCGGATCTGGACCGGCAGATCGAGCATCTCATGGAGTGCAAGCCTCTGTCGGAGGCGGAGGTGAAGGCGCTTTGCGATCAGGCCAGGGCGATTCTCGTCGAAGAGTGGAACGTTCAACCGGTGAAGTGTCCCGTCACCGTGTGCGGCGACATTCACGGCCAGTTTTATGATCTCATCGAGCTTTTTCGGATAGGAGGACACGCTCCCGATACCAACTACCTTTTTATGGGCGATTATGTAGATCGTGGCTACTATTCAGTGGAGACTGTTACACTTTTGGTGGCCTTGAAAGTCCGTTATAGAGATAGAATTACAATCCTTAGGGGAAATCATGAGAGTCGTCAAATCACTCAAGTTTATGGGTTCTACGATGCATTGAGAAAATATGGAAATGCTAATGTCTGGAAATTCTTTACCGACTTGTTTGATTATTTGCCTTTGACTGCCCTTATTGAGAGTCAGATTCTGCTTGCATGGTGTCTCTCACCATCTTTGGATACACTGGATAATATACGGGCGTTGGATCGCATACAGGAGGTTCCACACGAAGGACCAATGTGTGACCTATTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCAGGATATACATTTGGACAGGACATAGCTACTCGTTTTAATAACAATGGTCTCTCCCTAATATCTAGAGCTCACCAGCTTGTCATGGAAGGATACAATTGGTGCCAGGACAAGAATGTGGTGACTGTTTTTAGTGCACCTAATTATTGTTACCGATGTGGGAACATGGCTGCCATAATGGTCGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCCAGACAAATTGAGCCTGATACTACACGAAAGACTCCAGATTATTTTTTGTAA 909 0.4609 MPSHADLDRQIEHLMECKPLSEAEVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGHAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDACXRKYGNANVWKFFTDLFDYLPLTALIESQILLAWCLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIATRFNNXNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAIMEXGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2809g00018 305 CDD MPP_PP2A_PP4_PP6 6 289 - -
Vium2809g00018 305 Pfam Calcineurin-like phosphoesterase 48 238 IPR004843 GO:0016787
Vium2809g00018 305 SUPERFAMILY Metallo-dependent phosphatases 6 292 IPR029052 -
Vium2809g00018 305 FunFam Serine/threonine-protein phosphatase 1 305 - -
Vium2809g00018 305 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 5 305 IPR047129 GO:0004722
Vium2809g00018 305 ProSitePatterns Serine/threonine specific protein phosphatases signature. 111 116 IPR006186 GO:0016787
Vium2809g00018 305 Gene3D - 2 305 IPR029052 -
Vium2809g00018 305 SMART pp2a_7 20 289 IPR006186 GO:0016787
Vium2809g00018 305 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Vium2809g00018 305 PRINTS Serine/threonine phosphatase family signature 251 267 IPR006186 GO:0016787
Vium2809g00018 305 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Vium2809g00018 305 PRINTS Serine/threonine phosphatase family signature 229 249 IPR006186 GO:0016787
Vium2809g00018 305 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Vium2809g00018 305 PRINTS Serine/threonine phosphatase family signature 173 200 IPR006186 GO:0016787
Vium2809g00018 305 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2809g00018 Vium-Chr2809 122861 126424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2809g00018 49 224 Calmodulin-binding Proteins AT5G63870 34.579 1.90e-23 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2809g00018 K04382 - qsu:111997024 606.675