Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2809g00016 ATGGAGGAAAATCTGCCTCCTGGATTCAGGTTCCATCCTACAGACGAAGAACTCATCACATGTTATCTTACAAAGAAGGTTTCTGATTCTAGCTTCACATCCAAAGCTATAGCAGTCGTTGATCTCAACAAATCTGAACCATGGGACCTACCAGGTAAGGCTTCAATGGGTGAAAAAGAGTGGTACTTCTTTAGCTTAAGAGACAGAAAGTATCCAACTGGACTTCGGACAAACCGAGCGACTGAATCAGGTTACTGGAAAACAACAGGAAAAGACAAGGAAATTTATCGTACTGGTGTTTTGGTCGGAATGAAGAAAACCCTAGTCTTCTATAGAGGTAGAGCTCCAAGGGGAGAGAAAAGCAATTGGGTCATGCACGAATATAGACTCGAAAACAAGCATCACTTGAGACCTTCCAAGGATGAATGGGTGGTTTGCAGGGTTTTCCAGAAGAGCTTACTGGTGAAGAAACCACAGCAAACAAACTCATCACAACCAGATTCTCCATGTGACACAGTCTCAGTGGTCAATGAATTTGGTGATGTTGAGCTTCCTAATCTAAATAGCATTGCAAATTCTTCAGGTGGACTCACTGACAATATTTCAGGACACAGTTTCATGAATGCTGATATGAGTAATAGTGTTAACACAAGCATGAACTTGGCAATGAATTGGGCAGTTGCAAATGATGTTCATCAGGTCCCCTCTCTTCCATCACTACCATGGCCTTCTGGGTTGCTAAGTCCAAGCATTTCTTCTGTAAATTCTTTGCTTCTCAAGGCATTGCAACTTAGAAGTTATCAACAAAGAGAAGCAGCAGCAGCAGCAGCAGCAGCTACAGATCAATTTGCATCATTTATGGGTCAAGGAGTTTCCCAAGTTGGAACTGACCTAAGTTCAAATCTGACAGCATCTTCTTCAAAAGTTCAAGAATGTATGCCACAGCAGCAGCAACAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 990 0.4232 MEENLPPGFRFHPTDEELITCYLTKKVSDSSFTSKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIYRTGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLENKHHLRPSKDEWVVCRVFQKSLLVKKPQQTNSSQPDSPCDTVSVVNEFGDVELPNLNSIANSSGGLTDNISGHSFMNADMSNSVNTSMNLAMNWAVANDVHQVPSLPSLPWPSGLLSPSISSVNSLLLKALQLRSYQQREAAAAAAAATDQFASFMGQGVSQVGTDLSSNLTASSSKVQECMPQQQQQEQPFNLDSIW 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2809g00016 329 FunFam NAC domain-containing protein 100-like 14 154 - -
Vium2809g00016 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 252 - -
Vium2809g00016 329 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Vium2809g00016 329 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Vium2809g00016 329 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Vium2809g00016 329 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2809g00016 Vium-Chr2809 102337 104256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2809g00016 1 329 NAC Transcription Factor Family AT3G18400 55.952 7.34e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2809g00016 NAM 2.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2809g00016 - - pvu:PHAVU_004G156700g 526.554