Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2809g00006 ATGGCTGAATTCTCAGAAAATTTGCAACTTCAAAGCATTAGACCCTCTTCTTTTCCATTCTTAGACATTGATCCAAGCATGGAACTCATAAACCAATTCATTGGGATCAACCAACATGTCATAGACAACTCAAACTTGACTATGCACAACTTGATGCCATTTTCCTGTGACACCTTCTTGGGCCCTCAAGAACCTGAGTTTCCGGGAAACTTGGAGGAAAATTTCCCTGCCCTTGTTCATCATGTCAACCACAATGCACTTCCTGTTTCCCTCCCCATTTTCCAAGCAGAAAATGAGATCCACGAAGGTAAAAAGAGGAAATCGGTGGATCTTCCAGAGACCAGTTCAGCTAACTCAACTCCTGCAGTTTCTGAGACTGGAAGCAAGATAAAACAAAGTTCTGGAAAAGGAAAGAGAGCAAAAAGCAATGTGACAGAAGAAGAGAAAGCAAAGGAAGTGGTCCATGTGAGAGCCAGAAGAGGTCAAGCTACCGATAGTCACAGTTTAGCAGAAAGGGTGAGAAGAGGGAAAATCAATGAGAAATTAAGGTGCTTACAGAATATTGTTCCAGGATGTTACAAGACCATGGGTATGGCAGTAATGTTGGACGAAATCATAAACTATGTGCAGTCCCTGCAGCATCAAGTAGAGTTCCTTTCTCTGAAGCTTACTGCAGCAAGCACCTTTTATGACTTCAATTCCGAGACAGATGCTTTAGAAACAATGCAGAGAGCAAGAGCATCAGAGGCAAAAGAGTTAGGGAGGTATAAGAGAGAAGGGTATGGAGGAGTTTCTTGCTTTCAACCAAGTTGGCCACTTTGA 822 0.4258 MAEFSENLQLQSIRPSSFPFLDIDPSMELINQFIGINQHVIDNSNLTMHNLMPFSCDTFLGPQEPEFPGNLEENFPALVHHVNHNALPVSLPIFQAENEIHEGKKRKSVDLPETSSANSTPAVSETGSKIKQSSGKGKRAKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRARASEAKELGRYKREGYGGVSCFQPSWPL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2809g00006 273 SMART finulus 168 218 IPR011598 GO:0046983
Vium2809g00006 273 CDD bHLH_AtBPE_like 152 237 - -
Vium2809g00006 273 MobiDBLite consensus disorder prediction 112 139 - -
Vium2809g00006 273 Gene3D - 162 224 IPR036638 GO:0046983
Vium2809g00006 273 MobiDBLite consensus disorder prediction 104 168 - -
Vium2809g00006 273 MobiDBLite consensus disorder prediction 140 168 - -
Vium2809g00006 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Vium2809g00006 273 FunFam transcription factor BEE 3-like 159 230 - -
Vium2809g00006 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 228 IPR036638 GO:0046983
Vium2809g00006 273 Coils Coil 239 259 - -
Vium2809g00006 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 102 239 IPR024097 GO:0006355
Vium2809g00006 273 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2809g00006 Vium-Chr2809 41880 43800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2809g00006 84 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 55.656 7.46e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2809g00006 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2809g00006 - - gmx:100806942 496.508