Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2809g00005 ATGTCTGCTTCTTCAAAGAGCATCATCTGTTACAGTGAAGAAGATACTGAACTTAGAAGAGGGCCATGGAGTATTGAAGAGGATGATCTTCTTGGGAATTACATTGCCAATCATGGAGAAGGGAGATGGAATTTGCTTGCTATACGTGCAGGATTAAGGAGAACAGGAAAGAGTTGCAGATTAAGGTGGCTAAATTATCTAAAGCCAGATGTTAAACGAGGCAATTTAACCTCAGAGGAGCAGCTTTTGATTTTTGAACTCCACTCAAGGTGGGGTAACAGGTGGTCAAAAATTGCACAACAGCTGCCAGGCAGAACAGACAATGAAATAAAGAACTATTGGAGAACAAGGATTCAGAAACAAGCAAGATATATGAAATCTGAGACACAGAGAACAACAGGATTTGTAGAATTTTTCAAGGCTCTACAGATGACAAGATGTCTTCATAAAGCACAAGAATCATCTCCTTCAGCCATGTCACTCCAAGACCAAGAAATTCCTATGCCTTCTAATGGTGGTTTTCATTATTCATCATTTGGGATTGAGGCAACACCAGAAACACAAATCACTAGCCAGCGAGGTGTCAACCATTTGAATCAGCATGAGCAGAACTCAGACTCTGAGCACAACAATGGTTCAAGCATTTCCAATTCAGAATCAGTAAATATCCAATATATGACTCAGCCTTTGGGGTGCACTACAAATCAATTCCAAGCCTTAGACAACTATGACTTTGGCATCTGTTCATATGATGGCTACAACATAGACAACAGTGCCTATGACATGGATTCATTCAACCTGGCAGCCACAATGGATGCTCAGAATCTGGAACTACCAGTGATTGGTTGCCAAATATCAGAAACCAACTCGCTAAATATGGAATCTGAATGTAGCACAAGGAGCAATGATGAATTATGGCAATTTATGAACATATAA 936 0.4006 MSASSKSIICYSEEDTELRRGPWSIEEDDLLGNYIANHGEGRWNLLAIRAGLRRTGKSCRLRWLNYLKPDVKRGNLTSEEQLLIFELHSRWGNRWSKIAQQLPGRTDNEIKNYWRTRIQKQARYMKSETQRTTGFVEFFKALQMTRCLHKAQESSPSAMSLQDQEIPMPSNGGFHYSSFGIEATPETQITSQRGVNHLNQHEQNSDSEHNNGSSISNSESVNIQYMTQPLGCTTNQFQALDNYDFGICSYDGYNIDNSAYDMDSFNLAATMDAQNLELPVIGCQISETNSLNMESECSTRSNDELWQFMNI 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2809g00005 311 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vium2809g00005 311 Gene3D - 20 72 - -
Vium2809g00005 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Vium2809g00005 311 FunFam Myb transcription factor 20 72 - -
Vium2809g00005 311 FunFam MYB transcription factor 76 118 - -
Vium2809g00005 311 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Vium2809g00005 311 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Vium2809g00005 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Vium2809g00005 311 CDD SANT 77 116 IPR001005 -
Vium2809g00005 311 CDD SANT 22 67 IPR001005 -
Vium2809g00005 311 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 217 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium2809g00005 311 SMART sant 19 69 IPR001005 -
Vium2809g00005 311 SMART sant 72 120 IPR001005 -
Vium2809g00005 311 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Vium2809g00005 311 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Vium2809g00005 311 Gene3D - 75 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2809g00005 Vium-Chr2809 24191 25735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2809g00005 15 160 MYB Transcription Factor Family AT1G68320 63.699 2.92e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2809g00005 Myb_DNA-binding 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2809g00005 K09422 - gmx:100778425 472.626