Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2809g00004 ATGTACACATCAAGGAAGAAAATCCACAAAGATAAGGATGCTGAGCCAACTGAATTTGAGGAATCAGTTGGACAGGCATTCTTTGATCTTGAAAATACCAACAATGAGCTGAAAAGTGACCTGAAAGATTTATACATAAATTCAGCTGTCCAAATAGATGTTTCTGGGAACCGCAAGGCTGTGGTTATTCATGTCCCCTACAGATTAAGGAAGGGATTCAGGAAGATCCATGTCAGGCTTGTAAGAGAACTTGAGAAAAAATTTAGTGGGAAGGATGTAGTCCTGATTGCCACCAGGAGGATAGTGAGGCCACCAAAGAAAGGTTCTGCTGTTCAGCGTCCTCGCAGCCGCACACTCACTGCTGTGCATGAGGCAATGCTGGAGGATATTGTATTACCTGCTGAGATTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGGTGTTTTTGGACCCCAAGGAGAGAAACAACACTGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAGCTTTCAGGCAAAGATGTTGTTTTTGAATATCCTACATCTGAGGCTTAG 576 0.4236 MYTSRKKIHKDKDAEPTEFEESVGQAFFDLENTNNELKSDLKDLYINSAVQIDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHEAMLEDIVLPAEIVGKRVRYKIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPTSEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2809g00004 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vium2809g00004 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vium2809g00004 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2809g00004 Vium-Chr2809 20925 23366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2809g00004 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 76.440 1.21e-112 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2809g00004 K02993 - gmx:100527642 370.163